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NA29122 DNA from Fibroblast

Description:

DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 85 WITH OR WITHOUT MIDLINE BRAIN DEFECTS; DEE85
STRUCTURAL MAINTENANCE OF CHROMOSOMES 1A; SMC1A

Affected:

Yes

Sex:

Female

Age:

12 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • Publications
  • External Links

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Quantity 10 µg
Quantitation Method Please see our FAQ
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Sample Source DNA from Fibroblast
Race White
Subject Type parent/child concordant pair
Ethnicity Not Hispanic/Latino
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks Clinically affected. Patient B in Goldstein et al. 2015 (PMID: 26386245). See "Phenotypic Data" tab. Seizures began at 17 months. Responded to phenobarbital and valproic acid, did not respond to levetiracetam, oxcarbazepine and topiramate. Facial features of CdLS are not present. A 12-year-old female with de novo heterozygous mutation in the SMC1A gene (c.3549_3552dupZGGCC, p.I1185Gfs*23). Subject was noted of having intractable epilepsy and developmental impairments during sample submission.

Characterizations

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PDL at Freeze 4.73
Passage Frozen 2
 
Gene SMC1A
Chromosomal Location Xp11.22
Allelic Variant 1 300040.0009; DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 85 WITH OR WITHOUT MIDLINE BRAIN DEFECTS; DEE85
Identified Mutation c.3549_3552dupGGCC (p.I1185Gfs*23)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 12 YR
Sex Female
Age of Onset(If not a control) 15 MO
Age at Diagnosis(If not a control) 2 YR
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  SMC1A, C.3549_3552DUPGGCC, P.I1185GFS*23, EXON 24
Zygosity:  No Data
Other variants:  No Data
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  15 MONTHS
Age at Diagnosis:  2 YEARS
In Utero History Information
Abnormal fetal heart rate or rhythm
Fetal growth issues
Advanced maternal age
Decreased fetal movement
Intrauterine growth restriction
Oligohydramnios
Polyhydramnios
Assisted reproduction
Additional Information:  No Data
Birth History Information
Low birth weight
Jaundice
Difficulty breathing
Abnormal serum screen
Failure to thrive
Positive newborn screen
Caesarian section
Neural tube defect
Meconium ileus
Gastroischisis
Premature delivery
Additional Information:  No Data
Dysmorphic Features
Strabismus
Coarse facies
Short philtrum
Wide mouth
Cleft lip
Cleft palate
Cupped ears
Thick fleshy lips
Widely-spaced teeth
Tented cupid
Fetal pads
Simian crease
Abnormal hands or feet
Hypertelorism
Hypotelorism
Macrocephaly
Microcephaly
Holoprosencephaly
Additional Information:  No Data
Neurological Symptoms
Neuropathy:  No Data
Lissencephaly
Cerebral palsy
Corpus callosum abnormalities
Ataxia
Chorea
Dystonia
Hypertonia
Hypotonia
Seizures
Structural brain anomaly
Hydrocephalus
Sleep abnormalities
Polymicrogyria
Unstable gait
Dandy walker
White matter issues
Basal ganglia damage
Additional Information:  INTRACTABLE EPILEPSY
Optical and Audiological Symptoms
Defective vision
Pupil abnormality
Cornea abnormality
Nystagmus
Optic disk palor
Optic nerve damage
Blindness
Deafness
Defective hearing
Blepharitis
Congenital exotropia
Alacrima
Additional Information:  No Data
Musculoskeletal Symptoms
Acromelia
Rhizomelia
Club foot
Contractures
Scoliosis
Kyphosis
Skeletal dysplasia
Vertebral anomalies
Non-ambulatory
Additional Information:  FEMORAL ANTEVERSION
Developmental Milestones
Delayed speech and language development
Global developmental delay
Delayed fine motor skills
Delayed gross motor skills
Abnormal height for age
Abnormal weight for age
Holding Head Up Without Assistance:  No Data
Sitting Without Assistance:  No Data
Walking Without Assistance:  Achieved but not maintained
Running:  No Data
Additional Information:  DEVELOPMENTAL IMPAIRMENT
Gastrointestinal Symptoms
Hepatosplenomegaly
Pyloric stenosis
Hirschsprung
Bloating
Constipation
Gastrointestinal reflux
Eating difficulties
Cholecystectomy
Liver abnormalities
Pancreatitis
Esophageal atresia
Additional Information:  No Data
Genitourinary Symptoms
Kidney abnormalities
Abnormalities of the ureter
Abnormalities of the urethra
Polycystic kidneys
Renal agenesis
Urethral obstruction
Hydronephrosis
Megacystis
Urinary tract infection
Ovarian cancer
Cryptorchidism
Ambiguous genitalia
Additional Information:  No Data
Respiratory and Cardiovascular Symptoms
Hypoplastic left heart
Hypoplastic right heart
Coarctation of aorta
Atrial septal defect
AV canal defect
Tetralogy of fallot
Truncus arteriosus
Ebstein anomaly
Heart murmur
Poor circulation
Breathing irregularities
Pneumothorax
Diaphragmatic hernia
Asthma
Pulmonary valve atresia
Additional Information:  No Data
Cognitive and Behavioral Symptoms
Happy personality
Anxiety
Mood disorder
Behavioral problems
Autism spectrum disorder
Sensory processing disorder
Aggression
Memory loss
Sleep disturbances
Learning disability
Attention deficit hyperactivity disorder
Intellectual Disability:  No Data
Additional Information:  No Data
Additional Information
Uncategorized Symptoms:  No Data
Testing Performed
Neurological Testing:  BRAIN MRI AT 30 MONTHS: MILD ENLARGEMENT OF EXTRA-AXIAL SPACES AND SLIGHTLY THINNING OF CORPUS CALLOSUM; THE TEMPORAL LOBES HAD PROMINENT SULCI AND THE HIPPOCAMPI WERE NOTED TO BE ROUND AND SOMEWHAT SMALLER. EEG: GENERALIZED EPILEPTIFORM ACTIVITY OR OCCIPITAL ABNORMALITIES.
Optical and Audiological Testing:  No Data
Musculoskeletal and Developmental Testing:  No Data
Respiratory and Cardiovascular Testing:  No Data
Cognitive and Behavioral Testing:  No Data
Metabolic, Hematologic, and Endocrinologic Testing:  No Data
Uncategorized Testing:  No Data
Treatments and Assistive Devices
Occupational therapy
Physical therapy
Speech therapy
Wheelchair or ambulation devices
Orthotics
Service animal
Hearing aid
Communication or learning devices
music therapy
horseback therapy
craniosacral therapy
glasses
Surgeries  No Data
Additional Testing:  No Data
Medications
 PHENOBARBITAL, VALPROIC ACID, AND MANY OTHERS
Family History
 N/A
Remarks Clinically affected. Patient B in Goldstein et al. 2015 (PMID: 26386245). See "Phenotypic Data" tab. Seizures began at 17 months. Responded to phenobarbital and valproic acid, did not respond to levetiracetam, oxcarbazepine and topiramate. Facial features of CdLS are not present. A 12-year-old female with de novo heterozygous mutation in the SMC1A gene (c.3549_3552dupZGGCC, p.I1185Gfs*23). Subject was noted of having intractable epilepsy and developmental impairments during sample submission.

Publications

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Goldstein JH, Tim-Aroon T, Shieh J, Merrill M, Deeb KK, Zhang S, Bass NE, Bedoyan JK, Novel SMC1A frameshift mutations in children with developmental delay and epilepsy European journal of medical genetics58:562-8 2015
PubMed ID: 26386245

External Links

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Gene Cards SMC1A
Gene Ontology GO:0000070 mitotic sister chromatid segregation
GO:0000075 cell cycle checkpoint
GO:0000776 kinetochore
GO:0003682 chromatin binding
GO:0003777 microtubule motor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0005634 nucleus
GO:0006281 DNA repair
GO:0006810 transport
GO:0007049 cell cycle
GO:0007052 mitotic spindle assembly
GO:0007059 chromosome segregation
GO:0007064 mitotic sister chromatid cohesion
GO:0007126 meiosis
GO:0008280 cohesin core heterodimer
GO:0009314 response to radiation
GO:0016020 membrane
GO:0042626 ATPase activity, coupled to transmembrane movement of substances
GO:0042770 DNA damage response, signal transduction
GO:0046982 protein heterodimerization activity
NCBI Gene Gene ID:8243
NCBI GTR 300040 STRUCTURAL MAINTENANCE OF CHROMOSOMES 1A; SMC1A
301044 DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 85 WITH OR WITHOUT MIDLINE BRAIN DEFECTS; DEE85
OMIM 300040 STRUCTURAL MAINTENANCE OF CHROMOSOMES 1A; SMC1A
301044 DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 85 WITH OR WITHOUT MIDLINE BRAIN DEFECTS; DEE85
Pricing
International/Commercial/For-profit:
$281.00USD
U.S. Academic/Non-profit/Government:
$139.00USD
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How to Order
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