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GM29122 Fibroblast

Description:

DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 85 WITH OR WITHOUT MIDLINE BRAIN DEFECTS; DEE85
STRUCTURAL MAINTENANCE OF CHROMOSOMES 1A; SMC1A

Affected:

Yes

Sex:

Female

Age:

12 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • Publications
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Race White
Subject Type parent/child concordant pair
Ethnicity Not Hispanic/Latino
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks Clinically affected. Patient B in Goldstein et al. 2015 (PMID: 26386245). See "Phenotypic Data" tab. Seizures began at 17 months. Responded to phenobarbital and valproic acid, did not respond to levetiracetam, oxcarbazepine and topiramate. Facial features of CdLS are not present. A 12-year-old female with de novo heterozygous mutation in the SMC1A gene (c.3549_3552dupZGGCC, p.I1185Gfs*23). Subject was noted of having intractable epilepsy and developmental impairments during sample submission.

Characterizations

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PDL at Freeze 4.73
Passage Frozen 2
 
Gene SMC1A
Chromosomal Location Xp11.22
Allelic Variant 1 300040.0009; DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 85 WITH OR WITHOUT MIDLINE BRAIN DEFECTS; DEE85
Identified Mutation c.3549_3552dupGGCC (p.I1185Gfs*23)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 12 YR
Sex Female
Age of Onset(If not a control) 15 MO
Age at Diagnosis(If not a control) 2 YR
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  SMC1A, C.3549_3552DUPGGCC, P.I1185GFS*23, EXON 24
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  15 MONTHS
Age at Diagnosis:  2 YEARS
In Utero History Information
Birth History Information
Dysmorphic Features
Neurological Symptoms
Corpus callosum abnormalities
Seizures
Structural brain anomaly
Additional Information:  INTRACTABLE EPILEPSY
Optical and Audiological Symptoms
Musculoskeletal Symptoms
Additional Information:  FEMORAL ANTEVERSION
Developmental Milestones
Delayed speech and language development
Global developmental delay
Walking Without Assistance:  Achieved but not maintained
Additional Information:  DEVELOPMENTAL IMPAIRMENT
Gastrointestinal Symptoms
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Additional Information
Testing Performed
Neurological Testing:  BRAIN MRI AT 30 MONTHS: MILD ENLARGEMENT OF EXTRA-AXIAL SPACES AND SLIGHTLY THINNING OF CORPUS CALLOSUM; THE TEMPORAL LOBES HAD PROMINENT SULCI AND THE HIPPOCAMPI WERE NOTED TO BE ROUND AND SOMEWHAT SMALLER. EEG: GENERALIZED EPILEPTIFORM ACTIVITY OR OCCIPITAL ABNORMALITIES.
Treatments and Assistive Devices
Occupational therapy
Physical therapy
Speech therapy
Wheelchair or ambulation devices
Communication or learning devices
Medications
 PHENOBARBITAL, VALPROIC ACID, AND MANY OTHERS
Family History
 N/A
Remarks Clinically affected. Patient B in Goldstein et al. 2015 (PMID: 26386245). See "Phenotypic Data" tab. Seizures began at 17 months. Responded to phenobarbital and valproic acid, did not respond to levetiracetam, oxcarbazepine and topiramate. Facial features of CdLS are not present. A 12-year-old female with de novo heterozygous mutation in the SMC1A gene (c.3549_3552dupZGGCC, p.I1185Gfs*23). Subject was noted of having intractable epilepsy and developmental impairments during sample submission.

Publications

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Goldstein JH, Tim-Aroon T, Shieh J, Merrill M, Deeb KK, Zhang S, Bass NE, Bedoyan JK, Novel SMC1A frameshift mutations in children with developmental delay and epilepsy European journal of medical genetics58:562-8 2015
PubMed ID: 26386245

External Links

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Gene Cards SMC1A
Gene Ontology GO:0000070 mitotic sister chromatid segregation
GO:0000075 cell cycle checkpoint
GO:0000776 kinetochore
GO:0003682 chromatin binding
GO:0003777 microtubule motor activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0005634 nucleus
GO:0006281 DNA repair
GO:0006810 transport
GO:0007049 cell cycle
GO:0007052 mitotic spindle assembly
GO:0007059 chromosome segregation
GO:0007064 mitotic sister chromatid cohesion
GO:0007126 meiosis
GO:0008280 cohesin core heterodimer
GO:0009314 response to radiation
GO:0016020 membrane
GO:0042626 ATPase activity, coupled to transmembrane movement of substances
GO:0042770 DNA damage response, signal transduction
GO:0046982 protein heterodimerization activity
NCBI Gene Gene ID:8243
NCBI GTR 300040 STRUCTURAL MAINTENANCE OF CHROMOSOMES 1A; SMC1A
301044 DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 85 WITH OR WITHOUT MIDLINE BRAIN DEFECTS; DEE85
OMIM 300040 STRUCTURAL MAINTENANCE OF CHROMOSOMES 1A; SMC1A
301044 DEVELOPMENTAL AND EPILEPTIC ENCEPHALOPATHY 85 WITH OR WITHOUT MIDLINE BRAIN DEFECTS; DEE85

Culture Protocols

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Cumulative PDL at Freeze 4.73
Passage Frozen 2
Split Ratio 1:4
Temperature 37 C
Percent CO2 5%
Percent O2 3%
Medium Eagle's Minimum Essential Medium with Earle's salts and non-essential amino acids with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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