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GM23221 LCL from B-Lymphocyte

Description:

PROPIONIC ACIDEMIA
PROPIONYL-COA CARBOXYLASE, ALPHA SUBUNIT; PCCA

Affected:

Yes

Sex:

Male

Age:

30 MO (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • Publications
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Race Hispanic/Latino
Ethnicity Hispanic/Latino
Ethnicity COSTA RICAN
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks Clinically affected; newborn screened; eating by mouth; seizures; walked at 15 months of age; talked at 20 months of age; on metabolic formula and levocarnitine; donor subject is a compound heterozygote: one allele has a 4 bp deletion at nucleotide 1824+3 in intron 21 of the PCCA gene(IVS21+3del4) resulting in the skipping of intron 21 and the second allele has a substitution of cysteine for arginine at codon 243 [Arg243Cys (R243C)]

Characterizations

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Gene PCCA
Chromosomal Location 13q32
Allelic Variant 1 232000.0001; PROPIONIC ACIDEMIA
Identified Mutation 4-BP DEL, 1824IVS+3
 
Gene PCCA
Chromosomal Location 13q32
Allelic Variant 2 R243C; PROPIONIC ACIDEMIA
Identified Mutation ARG243CYS

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 30 MO
Sex Male
Hispanic or Latino/Not Hispanic or Latino Hispanic/Latino
Racial Category Hispanic/Latino
 
Data Elements
Clinical Element Type: Propionic Acidemia
  (Baseline)
Neonatal Data
Was this child newborn screened? yes   no  unknown 
If yes, was the result prior to hospitalization yes   no  unknown 
Weight at birth in kgs  3.23
Was child breast-fed? yes  no   unknown 
Failure to thrive? yes  no   unknown 
Molecular/Enzyme Laboratory Test Results
Which Gene: PCCA? yes   no  unknown 
Which Gene: PCCB? yes  no   unknown 
Mutations Allele 1  IVS21+3DEL4
Mutations Allele 2  R243C
Enzyme activity - % of normal  5
Family History
Are there other family members with PA? yes  no   unknown 
Other affected relatives? yes  no   unknown 
Has the individual passed away? yes  no   unknown 
Clinical Evaluation
Current weight in kgs  13.8
Current height in cms  95.5
Respiratory
Apnea yes  no   unknown 
Tachypnea yes  no   unknown 
Cardiovascular
Cardiomyopathy yes  no   unknown 
Long QT? yes  no   unknown 
If yes, type  No Data
Abdominal/Gastrointestinal
Pancreatitis chronic  acute  never noted  
Kidney problems yes  no   unknown 
Liver transplant yes  no   unknown 
Port-a-cath currently in place  not currently in place  never had one  
Gut motility normal   slow  requires medication  unknown 
Reflux yes  no   unknown 
Eating by mouth  100%
Tube fed yes  no   unknown 
Are anti-emetics used for vomiting yes  no   unknown 
Neurologic
Basal ganglia damage yes  no   unknown 
If yes, determined by  No Data
Seizures yes   no  unknown 
Autism spectrum disorder yes  no  unknown  
ADD/ADHD yes  no  unknown  
Optic nerve damage yes  no  unknown  
Neutropenia chronic  acute  unknown  
Anemia yes  no   unknown 
Immune deficiency yes  no   unknown 
Treated with IVIG yes  no   unknown 
Low platelets chronic  acute  not applicable  unknown  
Asthma yes  no   unknown 
Secondary hip dysplasia yes  no   unknown 
Broken bones yes  no   unknown 
Short stature yes  no  unknown  
Growth hormone treatment yes  no   unknown 
Osteoporosis yes  no  unknown  
Developmental Evaluation
Walking  100% of the time
Age when first walked  15 MONTHS
Language  slightly below age level
Age when first talked  20 MONTHS
Congitive ability  age appropriate
IQ known  untested  unsure  
Metabolic
Is the individual biotin responsive yes  no   unknown 
Episodes of ketoacidosis yes  no   unknown 
Chronic hyperammonemia yes  no   unknown 
Is the individual currently on metabolic formula yes   no  unknown 
If yes, which ones
Is the individual taking levocarnitine yes   no  unknown 
If yes, mg/kg  150
Other supllements
Remarks Clinically affected; newborn screened; eating by mouth; seizures; walked at 15 months of age; talked at 20 months of age; on metabolic formula and levocarnitine; donor subject is a compound heterozygote: one allele has a 4 bp deletion at nucleotide 1824+3 in intron 21 of the PCCA gene(IVS21+3del4) resulting in the skipping of intron 21 and the second allele has a substitution of cysteine for arginine at codon 243 [Arg243Cys (R243C)]

Publications

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Yeeok Kang, Seong-Hyeuk Nam, Kyung Sun Park, Yoonjung Kim, Jong-Won Kim, Eunjung Lee, Jung Min Ko, Kyung-A Lee and Inho ParkEmail, DeviCNV: detection and visualization of exon-level copy number variants in targeted next-generation sequencing data BMC Bioinformatics19: 2018
PubMed ID: 30326846

External Links

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Gene Cards PCCA
Gene Ontology GO:0004658 propionyl-CoA carboxylase activity
GO:0005524 ATP binding
GO:0005739 mitochondrion
GO:0006631 fatty acid metabolism
GO:0008152 metabolism
GO:0009374 biotin binding
GO:0016874 ligase activity
NCBI Gene Gene ID:5095
NCBI GTR 232000 PROPIONYL-CoA CARBOXYLASE, ALPHA SUBUNIT; PCCA
606054 PROPIONIC ACIDEMIA
OMIM 232000 PROPIONYL-CoA CARBOXYLASE, ALPHA SUBUNIT; PCCA
606054 PROPIONIC ACIDEMIA
Omim Description PROPIONIC ACIDEMIA

Culture Protocols

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Split Ratio 1:3
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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