GM03901
Fibroblast from Skin, Unspecified
Description:
FAMILIAL ADENOMATOUS POLYPOSIS 1; FAP1
|
Repository
|
NIGMS Human Genetic Cell Repository
|
| Subcollection |
Heritable Diseases Hereditary Cancers |
| Class |
Heritable Cancer Syndromes and other Cancers |
|
Biopsy Source
|
Unspecified
|
|
Cell Type
|
Fibroblast
|
|
Tissue Type
|
Skin
|
|
Transformant
|
Untransformed
|
|
Sample Source
|
Fibroblast from Skin, Unspecified
|
|
Race
|
Black/African American
|
|
Family Member
|
1
|
|
Relation to Proband
|
proband
|
|
Confirmation
|
Clinical summary/Case history
|
|
ISCN
|
46,XX,inv(9)(pter>p11::q13>p11::q13> qter)
|
|
Species
|
Homo sapiens
|
|
Common Name
|
Human
|
|
Remarks
|
|
| Passage Frozen |
3 |
| |
| IDENTIFICATION OF SPECIES OF ORIGIN |
Species of Origin Confirmed by Chromosome Analysis |
| |
| Gene |
APC |
| Chromosomal Location |
5q21-q22 |
| Allelic Variant 1 |
R216X; ADENOMATOUS POLYPOSIS COLI |
| Identified Mutation |
ARG216TER |
| Cytogenetics |
Chromosome 9: INVERSION Breakpoint 9p11 inv(9)9p11 |
|
Chromosome 9: INVERSION Breakpoint 9q13 inv(9)9q13 |
| Remarks |
Clinically affected with Gardner syndrome; fibroblast cells derived from skin biopsy; karyotype at p5 shows 11% of cells are polyploid - 46,XX,inv(9)(pter>p11:: q13>p11::q13>qter); balanced; subject had 2 intra-abdominal mesentery desmoids and recurrent low grade fibrosarcomas; DNA sequencing revealed that the donor subject has a C>T change at nucleotide 646 in exon 6 of the APC gene (646C>T) resulting in the conversion of an arginine at codon 216 to a stop codon [Arg216Ter (R216X)]; donor subject also has a polymorphism at exon 15: a C>T transition at nucleotide 2608 (2608C>T), which results in a proline 870 to serine substitution [Pro870Ser (P870S)]; similarly affected father (deceased - not in repository; fibromas, lipomas, metastatic colon cancer); same subject as GM03900 (tumor); |
| Passage Frozen |
3 |
| Split Ratio |
1:3 |
| Temperature |
37 C |
| Percent CO2 |
5% |
| Medium |
Eagle's Minimum Essential Medium with Earle's salts and non-essential amino acids with 2mM L-glutamine or equivalent |
| Serum |
15% fetal bovine serum Not inactivated |
| Substrate |
None specified |
| Subcultivation Method |
trypsin-EDTA |
| Supplement |
- |
|