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GM29132 iPSC from Fibroblast

Description:

LEIGH SYNDROME; LS
SURFEIT 1; SURF1

Affected:

Yes

Sex:

Male

Age:

33 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Protocols Protocol PDF
Biopsy Source Skin
Cell Type Stem cell
Cell Subtype Induced pluripotent stem cell
Transformant Reprogrammed (Sendai)
Sample Source iPSC from Fibroblast
Race Asian
Ethnicity Indian
Country of Origin INDIA
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
ISCN 46,XY[20]
Species Homo sapiens
Common Name Human
Remarks See "Phenotypic Data" tab. Reprogrammed from parental fibroblast GM28063. Researchers purchasing hiPSCs from the NIGMS Repository are responsible for any limited use label licenses (LULLs) applicable to the cell line purchased. The applicable LULL to this line is Sendai-CytoTune.

Characterizations

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Passage Frozen 14
 
Induced Pluripotent Stem Cell The parental cell line was recovered reprogrammed to an induced pluripotent stem cell line and expanded. The expanded line was evaluated for viability surface antigen expression and alkaline phosphatase activity. Pluripotency was assessed via embryoid body (EB) formation. Steady-state mRNA expression patterns of undifferentiated iPSC and EBs were determined via real-time PCR. Characterization data are included in the Certificate of Analysis.
 
Gene SURF1
Chromosomal Location 9q34.2
Allelic Variant 1 p.Asn178fs; LEIGH SYNDROME
Identified Mutation c.532_535del (p.Asn178fs)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 33 YR
Sex Male
Age of Onset(If not a control) 18 YR
Age at Diagnosis(If not a control) 32 YR
Racial Category Asian
Country INDIA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  NGS FOCUSED EXOME (6000 GENES) SEQUENCING AND DELETION DUPLICATION ANALYSIS REVEALED A HETEROZYGOUS PATHOGENIC VARIANT (AR) IN EXON 6 OF THE SURF1 GENE (NM_003172.3, CHR9:136219602-138219605, RS1057517942): C.532_535DEL
Zygosity:  Heterozygous
Other variants:  HETEROZYGOUS VARIANTS OF UNCERTAIN SIGNIFICANCE IN THE COL6A1, LARGE, AND MYH2 GENES; COL6A1 (NM_001848.2, CHR21:47417629-47417629, RS760275915): C.1477C>A (P.PRO493THR) IN EXON 22; LARGE (NM_004737.4, CHR22:34046370-34046370, RS56239539): C.391G>A (P.VAL131ILE) IN EXON 4; AND MYH2 (NM_017534.5, CHR17:10429936-10429986, RS374190003): C.4117G>A (P.GLU1373LYS) IN EXON 30
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  18 YEARS
Age at Diagnosis:  32 YEARS
In Utero History Information
Birth History Information
Dysmorphic Features
Neurological Symptoms
Optical and Audiological Symptoms
Musculoskeletal Symptoms
Additional Information:  LIMB GIRDLE MUSCULAR DYSTROPHY (LGMD); SCAPULAR WINGING; PROGRESSIVE PROXIMAL WEAKNESS; POSITIVE KILLEY SIGN; HMF; LONG ANTERIOR AND PROXIMAL AXILLARY FOLDS; WASTED THIGH MUSCLE, R>L; PSEUDOHYPERTROPHY OF CALVES; EXTENSOR DIGITORUM BREVIS (EDB) HYPERTROPHY; TRUNCAL WEAKNESS; POSITIVE GOWER SIGN; NO PIH OF PAIN IN THE HIPS OR SHOULDERS; DIFFICULTY CLIMBING
Developmental Milestones
Gastrointestinal Symptoms
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Additional Information
Testing Performed
Musculoskeletal and Developmental Testing:  NERVE CONDUCTION STUDIES; ELECTROPHYSIOLOGY/EMG TEST RESULT: DEMYELINATIVE TYPE SYMMETRIC MOTOR AXONOPATHY OF BOTH LL WITH E/O RADICULOPATHY; NORMAL MOTOR CONDUCTION WITH NORMAL DELAYED RESPONSES IB BOTH UL; MYOPATHIC AND DENERVATION PATTERN IN EMG
Metabolic, Hematologic, and Endocrinologic Testing:  INCREASED CREATINE PHOSPHOKINASE (CPK), 5017 U/L; NORMAL ERYTHROCYTE SEDIMENTATION RATE (ESR); HYPERCKEMIA
Treatments and Assistive Devices
Medications
Family History
 SINGLE CHILD OF CONSANGUINEOUS PARENTAGE; NO FAMILY HISTORY OF DISEASE
Remarks See "Phenotypic Data" tab. Reprogrammed from parental fibroblast GM28063. Researchers purchasing hiPSCs from the NIGMS Repository are responsible for any limited use label licenses (LULLs) applicable to the cell line purchased. The applicable LULL to this line is Sendai-CytoTune.

External Links

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Gene Cards MTATP6
SURF1
Gene Ontology GO:0004129 cytochrome-c oxidase activity
GO:0005739 mitochondrion
GO:0005746 mitochondrial electron transport chain
GO:0006118 electron transport
GO:0008535 cytochrome c oxidase biogenesis
GO:0009060 aerobic respiration
GO:0016021 integral to membrane
GO:0019866 inner membrane
NCBI Gene Gene ID:6834
NCBI GTR 185620 SURFEIT 1; SURF1
256000 LEIGH SYNDROME; LS
OMIM 185620 SURFEIT 1; SURF1
256000 LEIGH SYNDROME; LS
Omim Description LEIGH SYNDROME
  NECROTIZING ENCEPHALOPATHY, INFANTILE SUBACUTE, OF LEIGH; SNE

Culture Protocols

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Passage Frozen 14
Split Ratio 1:9
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium mTeSR1
Serum 0% none
Substrate Matrigel
Supplement -
Pricing
International/Commercial/For-profit:
$1,789.00USD
U.S. Academic/Non-profit/Government:
$1,110.00USD
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