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GM26668 Fibroblast from Skin, Skin

Description:

MENTAL RETARDATION, X-LINKED 102; MRX102
DEAD/H BOX 3, X-LINKED; DDX3X

Affected:

Yes

Sex:

Female

Age:

3 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Biopsy Source Skin
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Sample Source Fibroblast from Skin, Skin
Race White
Subject Type parent/child discordant pair
Ethnicity Not Hispanic/Latino
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Clinical summary/Case history
Species Homo sapiens
Common Name Human
Remarks Clinically affected; global developmental delay (developmental quotient 46 at 17 months); partial agenesis of corpus callosum; microcephaly; diffuse truncal hypotonia; normal planned pregnancy; delivered vaginally at term; issue immediately post- delivery with respiratory effort; post- birth issues with gaining weight; diagnosed with reflux; failure to meet milestones at six months of age; head shape is both dolichol and microcephalic; flattened face; small ~1-2mm mobile lump in the posterior right neck; small lightly hypopigmented patch on the right abdomen a few inches in diameter just next to the umbilicus; webbed 2nd and 3rd toes; delayed visual maturation; at approximately 6 months: brain imaging revealed dysgenesis of the corpus callosum; evaluation by ENT showed otitis media and bilateral effusions; had bilateral tympanostomy tube placement; 22 months: delayed in gross motor, fine motor and language function with more mild impairment in social function; MRI brain with and without GAD and MRA of the brain and neck showed microcephaly and micrognathia; poorly formed splenium and rostrum of the corpus callosum is seen; developmental age at 17 months was at 8 months; medications: CoQ10 daily; heterozygous de novo mutation in the DDX3X gene c.1490_1492delCTA (p.Thr498del); unaffected mother is GM26669.

Characterizations

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PDL at Freeze 7.47
Passage Frozen 2
 
IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin Confirmed by LINE assay
 
Gene DDX3X
Chromosomal Location Xp11.4
Allelic Variant 1 p.T498del; Mental Retardation X-Linked 102; MRX102
Identified Mutation c.1490_1492delCTA (p.Thr498del)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 3 YR
Sex Female
Age at Diagnosis(If not a control) 2 YR
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  DDX3X, C.1490_1492DELCTA (P.THR498DEL), DELETION
Zygosity:  Homozygous
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  AT BIRTH
Age at Diagnosis:  2 YEARS
In Utero History Information
Advanced maternal age
Birth History Information
Difficulty breathing
Dysmorphic Features
Microcephaly
Additional Information:  DOLICHOCEPHALIC FLATTED FACE RETRO AND MICROGNATHIA
Neurological Symptoms
Corpus callosum abnormalities
Hypotonia
Structural brain anomaly
Additional Information:  SMALL CEREBRUM PARTIAL AGENESIS OF CORPUS CALLOSUM MAL-RORATED HIPPOCAMPI
Optical and Audiological Symptoms
Defective vision
Defective hearing
Additional Information:  POOR VISUAL MATURATION DELAYED REACTION TIME DIMINISHED VISUAL ATTENTION OTITIS MEDIA WITH BILATERAL EFFUSION AND HEARING LOSS
Musculoskeletal Symptoms
Developmental Milestones
Delayed speech and language development
Global developmental delay
Delayed fine motor skills
Delayed gross motor skills
Sitting Without Assistance:  Achieved and maintained
Walking Without Assistance:  Not achieved and not maintained
Additional Information:  STAND WITH SUPPORT
Gastrointestinal Symptoms
Additional Information:  GASTROESOPHAGEAL REFLUX DISEASE IN THE FIRST FEW WEEKS POST-BIRTH, NO RECURRENT REFLEX DISEASE
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Additional Information:  MILD IMPAIRMENT IN SOCIAL FUNCTION
Additional Information
Testing Performed
Neurological Testing:  MRI: MICROCEPHALY, MICROGNATHIA, POORLY FORMED SPLENIUM AND ROSTRUM OF THE CORPUS CALLOSUM
Cognitive and Behavioral Testing:  BAYLEY AT 17 MONTHS: COGNITIVE RAW SCORE 31, RECEPTIVE LANGUAGE RAW SCORE 11, EXPRESSIVE LANGUAGE RAW SCORE 10, FINE MOTOR RAW SCORE 21, GROSS MOTOR RAW SCORE 28. COMPOSITE SCORES - COGNITIVE 55, LANGUAGE 62, MOTOR 46 DEVELOPMENTAL QUOTIENT 46
Metabolic, Hematologic, and Endocrinologic Testing:  TIBC: 536 (H) LACTATE 6.4 (H) CA 10.4 (H) ALKALINE PHOSPHATASE 283 (H) TOTAL VITAMIN D 19.5 (L) PYRUVATE 0.184 (H)
Uncategorized Testing:  MICROARRAY: NORMAL 46,XX FEMALE
Treatments and Assistive Devices
Occupational therapy
Physical therapy
Speech therapy
Surgeries  BILATERAL TYMPANOSTOMY TUBE PLACEMENT VISION THERAPY INFANT DEVELOPMENT CLASS
Medications
 CQ10
Family History
Remarks Clinically affected; global developmental delay (developmental quotient 46 at 17 months); partial agenesis of corpus callosum; microcephaly; diffuse truncal hypotonia; normal planned pregnancy; delivered vaginally at term; issue immediately post- delivery with respiratory effort; post- birth issues with gaining weight; diagnosed with reflux; failure to meet milestones at six months of age; head shape is both dolichol and microcephalic; flattened face; small ~1-2mm mobile lump in the posterior right neck; small lightly hypopigmented patch on the right abdomen a few inches in diameter just next to the umbilicus; webbed 2nd and 3rd toes; delayed visual maturation; at approximately 6 months: brain imaging revealed dysgenesis of the corpus callosum; evaluation by ENT showed otitis media and bilateral effusions; had bilateral tympanostomy tube placement; 22 months: delayed in gross motor, fine motor and language function with more mild impairment in social function; MRI brain with and without GAD and MRA of the brain and neck showed microcephaly and micrognathia; poorly formed splenium and rostrum of the corpus callosum is seen; developmental age at 17 months was at 8 months; medications: CoQ10 daily; heterozygous de novo mutation in the DDX3X gene c.1490_1492delCTA (p.Thr498del); unaffected mother is GM26669.

External Links

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Gene Cards DDX3X
Gene Ontology GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0004004 ATP-dependent RNA helicase activity
GO:0005524 ATP binding
NCBI Gene Gene ID:1654
NCBI GTR 300160 DEAD-BOX HELICASE 3, X-LINKED; DDX3X
300958 INTELLECTUAL DEVELOPMENTAL DISORDER, X-LINKED, SYNDROMIC, SNIJDERS BLOK TYPE; MRXSSB
OMIM 300160 DEAD-BOX HELICASE 3, X-LINKED; DDX3X
300958 INTELLECTUAL DEVELOPMENTAL DISORDER, X-LINKED, SYNDROMIC, SNIJDERS BLOK TYPE; MRXSSB

Culture Protocols

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Passage Frozen 2
Split Ratio 1:4
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Eagle's Minimum Essential Medium with Earle's salts and non-essential amino acids with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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