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GM26247 LCL from B-Lymphocyte

Description:

ULLRICH CONGENITAL MUSCULAR DYSTROPHY; UCMD1
COLLAGEN, TYPE VI, ALPHA-2; COL6A2

Affected:

Yes

Sex:

Male

Age:

14 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
Muscular Dystrophies
CMD Specific
PIGI Consented Sample
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Race White
Subject Type parent/child discordant pair
Ethnicity Not Hispanic/Latino
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks Clinically affected. See "Phenotypic Data" tab. Individual has a compound heterozygous mutation in the COL6A2 gene. The first allele is (inherited recessive) c.1970-3C>A. The other allele is de novo c.954+20_+55del36, which is likely to be an autosomal dominant disease-causing variant. Fibroblast is GM26248. Mother is GM26639 (LCL).

Characterizations

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IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin Confirmed by LINE assay
 
Gene COL6A2
Chromosomal Location 21q22.3
Allelic Variant 1 ; ULLRICH CONGENITAL MUSCULAR DYSTROPHY 1
Identified Mutation c.1970-3C>A
 
Gene COL6A2
Chromosomal Location 21q22.3
Allelic Variant 2 ; ULLRICH CONGENITAL MUSCULAR DYSTROPHY 1
Identified Mutation c.954+20_+55del36

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 14 YR
Sex Male
Age at Diagnosis(If not a control) 1 YR
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  COL6A2, C.954+20_+55DEL36, INTRON DELETION, INTRON 9
Zygosity:  Compound Heterozygous
Other variants:  COL6A2, C.1970-3C>A, SPLICING, INTRON 25
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  AT BIRTH
Age at Diagnosis:  1 YEAR
In Utero History Information
Birth History Information
Additional Information:  FLOPPY AT BIRTH WITH GENERALIZED MUSCLE WEAKNESS
Dysmorphic Features
Neurological Symptoms
Hypotonia
Additional Information:  POOR SKIN TONE
Optical and Audiological Symptoms
Musculoskeletal Symptoms
Developmental Milestones
Gastrointestinal Symptoms
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Additional Information
Testing Performed
Musculoskeletal and Developmental Testing:  MUSCLE BIOPSY AT 1 YEAR: A SINGLE NECROTIC FIBER AND SCATTERED REGENERATING FIBER AS EVIDENCE OF MYOPATHY; INCREASE OF ENDOMYSIAL CONNECTIVE TISSUE IN SOME FASCICLES REPRESENTING CHRONICITY; SCATTERED HYPERCONTRACTED FIBERS PRESENT; ABNORMAL FIBER SIZE VARIABILITY WITH A MIXTURE OF HYPERTROPHIC AND ATROPHIC FIBERS IN MOST FASCICLES; SOME FIBERS DEMONSTRATING FOCAL INCREASE OR DECREASE OF NADH DEHYDROGENASE ACTIVITY; TYPE I FIBERS SLIGHTLY MORE ABUNDANT THAN TYPE II FIBERS; INCREASES OF ACID PHOSPHATASE AND ALKALINE PHOSPHATASE IN SOME REGENERATING FIBERS.
Treatments and Assistive Devices
Surgeries  FEEDING TUBE PLACEMENT
Medications
Family History
Remarks Clinically affected. See "Phenotypic Data" tab. Individual has a compound heterozygous mutation in the COL6A2 gene. The first allele is (inherited recessive) c.1970-3C>A. The other allele is de novo c.954+20_+55del36, which is likely to be an autosomal dominant disease-causing variant. Fibroblast is GM26248. Mother is GM26639 (LCL).

External Links

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Gene Cards COL6A2
Gene Ontology GO:0005201 extracellular matrix structural constituent
GO:0005581 collagen
GO:0005737 cytoplasm
GO:0006817 phosphate transport
GO:0016337 cell-cell adhesion
GO:0030198 extracellular matrix organization and biogenesis
GO:0030674 protein binding, bridging
NCBI Gene Gene ID:1292
NCBI GTR 120240 COLLAGEN, TYPE VI, ALPHA-2; COL6A2
254090 ULLRICH CONGENITAL MUSCULAR DYSTROPHY 1; UCMD1
OMIM 120240 COLLAGEN, TYPE VI, ALPHA-2; COL6A2
254090 ULLRICH CONGENITAL MUSCULAR DYSTROPHY 1; UCMD1
Omim Description ULLRICH DISEASE

Culture Protocols

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Split Ratio 1:2
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 20% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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