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GM28606 LCL from B-Lymphocyte

Description:

SHWACHMAN-DIAMOND SYNDROME 1; SDS1
SBDS GENE; SBDS

Affected:

Yes

Sex:

Female

Age:

3 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Race White
Subject Type concordant sib pair
Ethnicity Not Hispanic/Latino
Ethnicity Italian, Russian, Yugoslavian
Country of Origin USA
Family Member 1
Family History Y
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks Slightly affected. Waking up in the middle of night crying. No pain or discomfort. Excellent appetite. No vomiting or diarrhea. No signs of fat malabsorption. See "Phenotypic Data" tab; affected sibling is GM28607 (lymph). Compound heterozygous mutation in SBDS

Characterizations

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Gene SBDS
Chromosomal Location 7q11.21
Allelic Variant 1 607444.0001; SHWACHMAN-DIAMOND SYNDROME 1; SDS1
Identified Mutation c.183_184delinsCT (p.K62X)
 
Gene SBDS
Chromosomal Location 7q11.21
Allelic Variant 2 607444.0002; Shwachman-Diamond Syndrome
Identified Mutation c.258+2T>C (IVS2+2T>C)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 3 YR
Sex Female
Age of Onset(If not a control) 3 YR
Age at Diagnosis(If not a control) 3 YR
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  SBDS, C.183_184_DELINSCT (P.K62X), NONSENSE, 2
Zygosity:  Heterozygous
Other variants:  SBDS, C.258+2T>C, ABERRANT SPLICING
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  3 YEARS
Age at Diagnosis:  3 YEARS
In Utero History Information
Birth History Information
Dysmorphic Features
Neurological Symptoms
Optical and Audiological Symptoms
Musculoskeletal Symptoms
Developmental Milestones
Gastrointestinal Symptoms
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Additional Information
Uncategorized Symptoms:  OVERWEIGHT (BMI 95 PERCENTILE)
Testing Performed
Metabolic, Hematologic, and Endocrinologic Testing:  PANCREATIC ELASTASE, FECAL: 58 UG/G (LOW) VITAMIN E, TOCOPHEROL: 10.2 MG/L (HIGH) VITAMIN D: 25 NG/ML (LOW) ALANINE TRANSAMINASE: 85 IU/L (HIGH) ASPARTATE AMINOTRANSFERASE: 39 IU/L (HIGH) MEAN CORPUSCULAR HEMOGLOBIN: 26.7 PG (LOW) RETICULOCYTE COUNT: 0.51% (LOW) ULTRASOUND RIGHT UPPER QUADRANT: NO ACUTE FINDING
Treatments and Assistive Devices
Medications
 MULTIVITAMIN WITH FLUORIDE
Family History
 YOUNGER SISTER IS DIAGNOSED WITH SHWACHMAN-DIAMOND SYNDROME 1 (FAILURE TO THRIVE)
Remarks Slightly affected. Waking up in the middle of night crying. No pain or discomfort. Excellent appetite. No vomiting or diarrhea. No signs of fat malabsorption. See "Phenotypic Data" tab; affected sibling is GM28607 (lymph). Compound heterozygous mutation in SBDS

External Links

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Gene Cards SBDS
Gene Ontology GO:0005554 molecular_function unknown
NCBI Gene Gene ID:51119
NCBI GTR 260400 SHWACHMAN-DIAMOND SYNDROME 1; SDS1
607444 SBDS GENE; SBDS
OMIM 260400 SHWACHMAN-DIAMOND SYNDROME 1; SDS1
607444 SBDS GENE; SBDS
Omim Description LIPOMATOSIS OF PANCREAS, CONGENITAL
  PANCREATIC INSUFFICIENCY AND BONE MARROW DYSFUNCTION
  SHWACHMAN-BODIAN SYNDROME
  SHWACHMAN-DIAMOND SYNDROME

Culture Protocols

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Split Ratio 1:5
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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