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GM28475 Fibroblast from Skin, Skin

Description:

EHLERS-DANLOS SYNDROME, TYPE VI
PROCOLLAGEN-LYSINE, 2-OXOGLUTARATE 5-DIOXYGENASE; PLOD1

Affected:

Yes

Sex:

Female

Age:

3 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Biopsy Source Skin
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Sample Source Fibroblast from Skin, Skin
Race More than one race
Ethnicity Hispanic/Latino
Ethnicity JEWISH, SIRIAN
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks See "Phenotypic Data" Tab

Characterizations

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PDL at Freeze 9.37
Passage Frozen 2
 
Gene PLOD1
Chromosomal Location 1p36.3-p36.2
Allelic Variant 2 Gly159ValfsTer68; EHLERS-DANLOS SYNDROME, KYPHOSCOLIOTIC TYPE, 1; EDSKSCL1
Identified Mutation c476delG (p.Gly159ValfsTer68)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 3 YR
Sex Female
Age at Diagnosis(If not a control) 9 MO
Hispanic or Latino/Not Hispanic or Latino Hispanic/Latino
Racial Category More than one race
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  SEQUENCING REVEALED A HOMOZYGOUS PATHOGENIC VARIANT (C.476DELG) IN THE PLOD1 GENE RESULTING IN A FRAMESHIFT MUTATION (P.GLY159VALFSTER68).
Zygosity:  Homozygous
Age of Symptom Onset and Age at Diagnosis
Age at Diagnosis:  9 MONTHS
In Utero History Information
Birth History Information
Dysmorphic Features
Additional Information:  SLENDER HABITUS, MARFANOID IN APPEARANCE; PROMINENT FOREHEAD; BITEMPORAL HOLLOWING;
Neurological Symptoms
Hypotonia
Additional Information:  CENTRAL NERVOUS SYSTEM HEMORRHAGE; BRACHIAL PLEXUS INJURY;
Optical and Audiological Symptoms
Musculoskeletal Symptoms
Scoliosis
Additional Information:  LOW TONE; KYPHOSCOLIOSIS; ARM INJURY; HYPEREXTENSIBLE; INCREASED FLEXIBILITY ON ALL JOINTS;
Developmental Milestones
Additional Information:  DIFFICULTIES WITH CRAWLING AND STANDING; CANNOT BEAR WEIGHT ON ARMS;
Gastrointestinal Symptoms
Genitourinary Symptoms
Additional Information:  URINE SCREEN SHOWED DEOXY-PRYIDINOLINE/PYRIDINOLINE RATIO MARKEDLY INCREASED
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Additional Information
Uncategorized Symptoms:  SENSITIVE SKIN; KERATOSIS PILARIS ON LEGS;
Testing Performed
Neurological Testing:  BRAIN MRI SHOWED ENLARGEMENT OF HEMORRHAGIC CAVITY ON RIGHT SIDE, MILDLY INCREASED SIZE OF THIRD AND LATERAL VENTRICLES; SPINE MRI SHOWED MILDLY THICKENED FRIABLE FATTY FILUM AT LUMBOSACRAL JUNCTION; BRACHIAL PLEXUS MRI SHOWS SLIGHT THICKENING OF RIGHT C7 PROXIMAL RADIUS AND RIGHT BRACHIAL PLEXUS TRACTION INJURY WITH POSTTRAUMATIC NEUROMA
Treatments and Assistive Devices
Occupational therapy
Physical therapy
Wheelchair or ambulation devices
Surgeries  BRACHIAL PLEXUS SURGERY
Medications
Family History
 NO FAMILY HISTORY OF ELHERS-DANLOS SYNDROME; GRANDFATHER HAS A HISTORY OF SEIZURES; GRANDMOTHER HAS A HISTORY OF THYROID DISEASE
Remarks See "Phenotypic Data" Tab

External Links

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Gene Cards PLOD1
Gene Ontology GO:0005489 electron transporter activity
GO:0005783 endoplasmic reticulum
GO:0006464 protein modification
GO:0008475 procollagen-lysine 5-dioxygenase activity
GO:0008544 epidermis development
GO:0016020 membrane
GO:0016491 oxidoreductase activity
GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
NCBI Gene Gene ID:5351
NCBI GTR 153454 PROCOLLAGEN-LYSINE, 2-OXOGLUTARATE 5-DIOXYGENASE; PLOD1
225400 EHLERS-DANLOS SYNDROME, KYPHOSCOLIOTIC TYPE, 1; EDSKSCL1
OMIM 153454 PROCOLLAGEN-LYSINE, 2-OXOGLUTARATE 5-DIOXYGENASE; PLOD1
225400 EHLERS-DANLOS SYNDROME, KYPHOSCOLIOTIC TYPE, 1; EDSKSCL1
Omim Description EDS VI
  EDS6
  EHLERS-DANLOS SYNDROME, KYPHOSCOLIOTIC TYPE
  EHLERS-DANLOS SYNDROME, TYPE VI

Culture Protocols

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Cumulative PDL at Freeze 9.37
Passage Frozen 2
Split Ratio 1:7
Temperature 37 C
Percent CO2 5%
Percent O2 3%
Medium Eagle's Minimum Essential Medium with Earle's salts and non-essential amino acids with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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