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GM28392 LCL from B-Lymphocyte

Description:

ATR-X SYNDROME
ATRX CHROMATIN REMODELER; ATRX

Affected:

Yes

Sex:

Male

Age:

4 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Race White
Ethnicity Hispanic/Latino
Ethnicity Spanish, Mexican, and European
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks See Phenotypic Data tab; unaffected father is GM28395 (LCL)

Characterizations

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Gene ATRX
Chromosomal Location Xq21.1
Allelic Variant 1 Arg2085Cys; ALPHA-THALASSEMIA/MENTAL RETARDATION SYNDROME, X-LINKED; ATRX
Identified Mutation c.6253 C>T (p.Arg2085Cys)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 4 YR
Sex Male
Age at Diagnosis(If not a control) 2 YR
Hispanic or Latino/Not Hispanic or Latino Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  WHOLE EXOME SEQUENCING REVEALED A PATHOGENIC VARIANT (C.6253C>T) IN EXON 28 OF THE ATRX GENE (NM_000489.3) RESULTING IN A MISSENSE MUTATION (P.ARG2085CYS)
Zygosity:  Hemizygous
Notes: HEMIZYGOUS FOR X-LINKED DISORDER
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  BIRTH
Age at Diagnosis:  2 YEARS
In Utero History Information
Birth History Information
Dysmorphic Features
Additional Information:  EPICANTHAL EYE FOLDS; WIDE NASAL BRIDGE; INVERTED NIPPLES
Neurological Symptoms
Hypotonia
Additional Information:  CEREBRAL VISUAL IMPAIRMENT; POSSIBLE PERIVENTRICULAR LEUKOMALACIA
Optical and Audiological Symptoms
Musculoskeletal Symptoms
Additional Information:  LOW TONE IN MOUTH; SHORT STATURE
Developmental Milestones
Global developmental delay
Gastrointestinal Symptoms
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Additional Information
Testing Performed
Treatments and Assistive Devices
Occupational therapy
Physical therapy
Speech therapy
Orthotics
Communication or learning devices
Medications
 MIRALAX
Family History
 MOTHER IS AN UNAFFECTED CARRIER
Remarks See Phenotypic Data tab; unaffected father is GM28395 (LCL)

External Links

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Gene Cards ATRX
Gene Ontology GO:0003678 DNA helicase activity
GO:0003700 transcription factor activity
GO:0005524 ATP binding
GO:0005634 nucleus
GO:0005720 nuclear heterochromatin
GO:0006281 DNA repair
GO:0006306 DNA methylation
GO:0006310 DNA recombination
GO:0006355 regulation of transcription, DNA-dependent
GO:0007001 chromosome organization and biogenesis (sensu Eukarya)
GO:0007605 perception of sound
NCBI Gene Gene ID:546
NCBI GTR 300032 ATR-X GENE; ATRX
301040 ALPHA-THALASSEMIA/MENTAL RETARDATION SYNDROME, X-LINKED; ATRX
OMIM 300032 ATR-X GENE; ATRX
301040 ALPHA-THALASSEMIA/MENTAL RETARDATION SYNDROME, X-LINKED; ATRX
Omim Description ALPHA-THALASSEMIA/MENTAL RETARDATION SYNDROME, NONDELETION TYPE
  ATR, NONDELETION TYPE; ATR2
  ATR-X SYNDROME; ATRX
  X-LINKED ALPHA-THALASSEMIA/MENTAL RETARDATION

Culture Protocols

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Split Ratio 1:3
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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How to Order
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