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GM28333 LCL from B-Lymphocyte

Description:

NEURODEGENERATION WITH BRAIN IRON ACCUMULATION 5; NBIA5
BETA-PROPELLER PROTEIN-ASSOCIATED NEURODEGENERATION; BPAN
WD REPEAT-CONTAINING PROTEIN 45; WDR45

Affected:

Yes

Sex:

Female

Age:

6 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Race White
Ethnicity Not Hispanic/Latino
Ethnicity Finish/German
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks See "Phenotypic Data" tab; Fibro is GM28332

Characterizations

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Gene WDR45
Chromosomal Location Xp11.23
Allelic Variant 1 p.Ala79Thr; NEURODEGENERATION WITH BRAIN IRON ACCUMULATION 5; NBIA5
Identified Mutation c.235G>A (p.A79T)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 6 YR
Sex Female
Age of Onset(If not a control) 18 MO
Age at Diagnosis(If not a control) 4 YR
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  EXOME SEQUENCING OF GENOMIC DNA TARGETING GENES IN A COMPREHENSIVE EPILEPSY PANEL REVEALED A LIKELY PATHOGENIC HETEROZYGOUS DE NOVO VARIANT (C.235 G>A) IN EXON 5 OF THE WDR45 GENE (NM_007075.3) RESULTING IN A NON-CONSERVATIVE SUBSTITUTION (P.ALA79THR). ALIGNED TO HUMAN GENOME BUILD GRCH37/HG19. WHOLE EXOME SEQUENCING DID NOT IDENTIFY ADDITIONAL VARIANTS INTERPRETED TO BE RELATED TO THE PHENOTYPE.
Zygosity:  Heterozygous
Other variants:  HETEROZYGOUS VARIANT (C.3708 G>T) IN THE POLG GENE (P.GLN1236HIS) INHERITED FROM THE MOTHER
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  18 MONTHS
Age at Diagnosis:  4 YEARS
In Utero History Information
Birth History Information
Jaundice
Additional Information:  BORN VIA SCHEDULED REPEAT C-SECTION AT 38 WEEKS; MILD JAUNDICE INITIALLY; RSV REQUIRED HOSPITALIZATION AT 6 WEEKS OF AGE
Dysmorphic Features
Microcephaly
Additional Information:  DYSMORPHIC FACIAL FEATURES
Neurological Symptoms
Hypotonia
Additional Information:  GENERALIZED MYOCLONIC SEIZURES; TRUNCAL HYPOTONIA; GENERALIZED EPILEPSY; EEG AT AGE OF 3 WAS ABNORMAL DUE TO POSSIBLE MYOCLONIC SEIZURES, OCCASIONAL GENERALIZED EPILEPTIFORM DISCHARGES, MILD DIFFUSE BACKGROUND SLOWING, EXCESS BETA ACTIVITY; EEG AT AGE OF 5 WAS MODERATELY ABNORMAL DUE TO INFREQUENT BURSTS OF GENERALIZED EPILEPTIFORM DISCHARGE, MORE PROMINENT IN THE LEFT HEMISPHERE; EEG AT AGE OF 7 WAS ABNORMAL DUE TO INTERMITTENT BRIEF BURSTS EPILEPTIFORM DISCHARGES, OCCASIONAL FRONTAL INTERMITTENT RHYTHMIC DELTA ACTIVITY (FRIDA), MILD DIFFUSE BACKGROUND SLOWING, OCCASIONAL BROAD-BASED SLOW WAVE COMPLEXES IN SLEEP; MRI WITH AND WITHOUT GADOLINIUM CONTRAST AT AGE OF 3 SHOWED SUBTLE SIGNAL ABNORMALITY IN THE DENTATE NUCLEI OF UNCERTAIN ETIOLOGY (MILD INCREASED SIGNAL INTENSITY IN THE DENTATE NUCLEI AND T2-WEIGHTED IMAGES OF UNCERTAIN ETIOLOGY); MRI OF THORACIC AND LUMBAR SPINE WERE NEGATIVE
Optical and Audiological Symptoms
Additional Information:  AUDIOLOGY STUDY AT AGE OF 1 FOUND NORMAL HEARING AND MIDDLE EAR FUNCTION BILATERALLY
Musculoskeletal Symptoms
Additional Information:  LEG LENGTH DISCREPANCY, RESULTING IN USE OF QUARTER INCH LIFT IN LEFT SHOE
Developmental Milestones
Delayed speech and language development
Additional Information:  SPEECH DELAY; DELAYED MILESTONES; SLOW PROGRESSION OF SKILLS, SPEECH PROGRESSING THE MOST; FIRST WORDS AT 18 MONTHS, SITTING AT 9 MONTHS, WALKING AT 18 MONTHS
Gastrointestinal Symptoms
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Sleep disturbances
Intellectual Disability:  Mild
Additional Information:  MOTOR AND SPEECH APRAXIA; TROUBLE WITH BOUNDARIES; TROUBLE MAINTAINING FOCUS AND COOPERATION; DIFFICULTY WITH EXPRESSIVE AND RECEPTIVE LANGUAGE; UNINTELLIGIBLE SPEECH; HISTORY OF SNORING AND MILD OBSTRUCTIVE SLEEP APNEA; HAS LITTLE FEAR AND HIGH PAIN TOLERANCE; NEUROPSYCHOLOGICAL EVALUATION INDICATED THE EXCEPTIONALLY LOW RANGE FOR THE FOLLOWING FIELDS: FULL SCALE INTELLIGENCE QUOTIENT, VERBAL COMPREHENSION, NONVERBAL FLUID REASONING, VISUAL MOTOR INTEGRATION, VISUAL SPATIAL, BRIEF ATTENTION/WORKING MEMORY, ADAPTIVE FUNCTION/ACTIVITIES OF DAILY LIVING, AND VOCABULARY ACQUISITION;
Additional Information
Uncategorized Symptoms:  DIAGNOSED WITH COVID, EXHIBITING MILD SYMPTOMS
Testing Performed
Neurological Testing:  MRI; EEG; ECHO
Treatments and Assistive Devices
Occupational therapy
Surgeries  OCCUPATIONAL, PHYSICAL, AND SPEECH THERAPY CONDUCTED VIRTUALLY DUE TO COVID PRECAUTIONS
Medications
 LEVETIRACETAM (KEPPRA); DIASTAT
Family History
 SIGNIFICANT FOR ANXIETY, DEPRESSION, AND PANCREATIC CANCER
Remarks See "Phenotypic Data" tab; Fibro is GM28332

External Links

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Gene Cards WDR45
NCBI GTR 300526 WD REPEAT-CONTAINING PROTEIN 45; WDR45
300894 NEURODEGENERATION WITH BRAIN IRON ACCUMULATION 5; NBIA5
OMIM 300526 WD REPEAT-CONTAINING PROTEIN 45; WDR45
300894 NEURODEGENERATION WITH BRAIN IRON ACCUMULATION 5; NBIA5

Culture Protocols

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Split Ratio 1:6
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 20% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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