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GM28031 Fibroblast from Skin, Thigh

Description:

LEIGH SYNDROME; LS
SURFEIT 1; SURF1

Affected:

Yes

Sex:

Male

Age:

3 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Biopsy Source Thigh
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Sample Source Fibroblast from Skin, Thigh
Race White
Ethnicity Not Hispanic/Latino
Ethnicity Polish
Country of Origin POLAND
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks Clinically affected. See "Phenotypic Data" Tab; unaffected carrier parents are GM28030 (father, fibro) and GM28032 (mother, fibro).

Characterizations

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PDL at Freeze 8.5
Passage Frozen 3
 
Gene SURF1
Chromosomal Location 9q34.2
Allelic Variant 1 185620.0014; LEIGH SYNDROME
Identified Mutation c.845_846delCT (p.Ser282Cysfs*9); In 9 of 40 unrelated patients with mitochondrial complex IV deficiency (MC4DN1; 220100) manifest as Leigh syndrome, Pequignot et al. (2001) identified a 2-bp deletion in the SURF1 gene (845delCT).
 
Gene SURF1
Chromosomal Location 9q34.2
Allelic Variant 2 185620.0003; LEIGH SYNDROME
Identified Mutation c.312_321del10insAT (p.Leu105*)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 3 YR
Sex Male
Age of Onset(If not a control) 15 MO
Age at Diagnosis(If not a control) 15 MO
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country POLAND
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  GENE AMPLIFICATION AND SANGER SEQUENCING OF BLOOD DNA IDENTIFIED HETEROZYGOUS PATHOGENIC VARIANTS IN THE SURF1 GENE (NM_003172.3, NP_003163.1): C.845_846DELCT (P.SER282CYSFS*9) IN EXON 9 RESULTING IN A FRAMESHIFT AT GENOMIC LOCATION CHR9 (GRCH38):G.133351970-133351971 AND C.312_321DELINSAT (P.LEU105*) IN EXON 4 RESULTING IN A NONSENSE CODON AT GENOMIC LOCATION CHR9(GRCH38):G.133354661_133354670.
Zygosity:  Heterozygous
Other variants:  THE PRESENCE OF MUTATIONS, INCLUDING C.418G>A, IN THE TESTED FRAGMENT OF THE SCO2 GENE WAS NOT DEMONSTRATED; NO PATHOGENIC VARIANTS, INCLUDING M.8993T>G, M.8993T>C, AND M.9185T>C WERE DETECTED IN THE MTATP6 GENE
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  15 MONTHS
Age at Diagnosis:  15 MONTHS; DIAGNOSED BY GENETICIST
In Utero History Information
Birth History Information
Dysmorphic Features
Neurological Symptoms
Optical and Audiological Symptoms
Musculoskeletal Symptoms
Developmental Milestones
Additional Information:  REGRESSION OF MOTOR DEVELOPMENT AT 15 MONTHS OF AGE; DID NOT WALK ALONE AT 15 MONTHS; ONCE PLACED ON SPECIALIZED MILK, GAINED WEIGHT AND STRENGTH AND DEVELOPED NORMALLY OR AGE APPROPRIATELY - BY LEARNING NEW WORDS, COUNTING, ETC.; LATER WAS ABLE TO EAT, SAT AND STOOD ALONE AND WALKED SUPPORTED BY HANDS; AT 2.5 YEARS OF AGE NEEDED SURGERY TO EXTRACT 2 FRONT TEETH, THEN ACQUIRED AN INFECTION AND HAD AN ACCUMULATION OF CARBON DIOXIDE IN BODY; STOPPED WALKING BY THE HANDS, SITTING AND STANDING ALONE; REHABILITATION CAUSED A REGAIN IN STRENGTH; 5 MONTHS LATER DEVELOPED PNEUMONIA AND OTHER INFECTIONS AFTER BEING HOSPITALIZED AND WAS PLACED ON A RESPIRATOR; TRACHEOSTOMY AND G-TUBE PLACEMENT FOLLOWED; RECEIVED MECHANICAL VENTILATION AT NIGHT AFTER DISCHARGE FROM HOSPITAL; CURRENTLY DOES NOT REQUIRE MECHANICAL VENTILATION AND IS ABLE TO BREATHE INDEPENDENTLY
Gastrointestinal Symptoms
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Additional Information
Testing Performed
Neurological Testing:  MRI AT 15 MONTHS OF AGE SHOWED VISIBLE HIGH FREQUENCY BANDS (INCREASED SIGNAL) SYMMETRICALLY ON BOTH SIDES IN THE MIDBRAIN; SIMILAR BUT LESS MARKED CHANGES IN AREA OF NUCLEUS DENTATUS; DEGENERATIVE CHANGES IN THE WHITE MATTER PARAVENTRICULAR; SUGGESTED CHANGES IN GENETIC METABOLIC DISEASE IN FIELD OF MITOCHONDRIAL LEUKOENCEPHALOPATHY - NOT FULLY DEVELOPED LEIGH SYNDROME
Treatments and Assistive Devices
Occupational therapy
Physical therapy
Additional Testing:  ASSISTIVE DEVICE: STANDING FRAME; SURGERIES: TRACHEOSTOMY, G-TUBE
Medications
 COENZYME Q SUPPLEMENT
Family History
 PARENTS GM28030 (FATHER) AND GM28032 (MOTHER) ARE UNAFFECTED CARRIERS; IT IS NOT KNOWN WHICH VARIANT EACH PARENT CARRIES.
Remarks Clinically affected. See "Phenotypic Data" Tab; unaffected carrier parents are GM28030 (father, fibro) and GM28032 (mother, fibro).

External Links

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Gene Cards MTATP6
SURF1
Gene Ontology GO:0004129 cytochrome-c oxidase activity
GO:0005739 mitochondrion
GO:0005746 mitochondrial electron transport chain
GO:0006118 electron transport
GO:0008535 cytochrome c oxidase biogenesis
GO:0009060 aerobic respiration
GO:0016021 integral to membrane
GO:0019866 inner membrane
NCBI Gene Gene ID:6834
NCBI GTR 185620 SURFEIT 1; SURF1
256000 LEIGH SYNDROME; LS
OMIM 185620 SURFEIT 1; SURF1
256000 LEIGH SYNDROME; LS
Omim Description LEIGH SYNDROME
  NECROTIZING ENCEPHALOPATHY, INFANTILE SUBACUTE, OF LEIGH; SNE

Culture Protocols

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Cumulative PDL at Freeze 8.5
Passage Frozen 3
Split Ratio 1:2
Temperature 37 C
Percent CO2 5%
Percent O2 3%
Medium Eagles Minimum Essential Medium with Earle's salts:Dulbecco's modified MEM with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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