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GM28019 Fibroblast from Skin, Skin

Description:

LEIGH SYNDROME; LS
MARFAN SYNDROME; MFS
SURFEIT 1; SURF1
FIBRILLIN 1; FBN1

Affected:

Yes

Sex:

Female

Age:

15 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Biopsy Source Skin
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Sample Source Fibroblast from Skin, Skin
Race White
Ethnicity Not Hispanic/Latino
Ethnicity Dutch
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks See Phenotypic Data tab. Clinically affected; has two affected siblings in family 3515: GM28020 (brother) and GM28021 (brother). Carrier parents are GM28022 (mother) and GM28023 (father).

Characterizations

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PDL at Freeze 7.2
Passage Frozen 3
 
Gene SURF1
Chromosomal Location 9q34.2
Allelic Variant 1 185620.0003; LEIGH SYNDROME
Identified Mutation c.312_321del10insAT (p.Leu105*)
 
Gene FBN1
Chromosomal Location 15q21.1
Allelic Variant 1 p.Glu1366Lys; MARFAN SYNDROME
Identified Mutation c.4096G>A (p.E1366K)
 
Gene SURF1
Chromosomal Location 9q34.2
Allelic Variant 2 p.L90P; LEIGH SYNDROME
Identified Mutation c.269T>C (p.L90P)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 15 YR
Sex Female
Age of Onset(If not a control) 1 YR
Age at Diagnosis(If not a control) 12 YR
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  POSITIVE FOR FAMILIAL SURF1 MUTATION; WHOLE EXOME SEQUENCING REVEALED COMPOUND HETEROZYGOUS AUTOSOMAL RECESSIVE MUTATIONS IN EXON 4 OF THE SURF1 GENE (NM_003172.2); A PATERNALLY INHERITED HETEROZYGOUS MUTATION, C.269T>C (P.L90P), AND A MATERNALLY INHERITED HETEROZYGOUS MUTATION, C.312_321DEL10INSAT; READS WERE ALIGNED TO HUMAN GENOME BUILD GRCH37/UCSC HG19
Zygosity:  Compound Heterozygous
Other variants:  HETEROZYGOUS LIKELY PATHOGENIC PATERNALLY INHERITED AUTOSOMAL DOMINANT MUTATION IN EXON 34 OF THE FBN1 GENE: C.4096G>A (P.E1366K OR P.GLU1366LYS (GAA>AAA)); GEL ELECTROPHORESIS OF SALIVA DNA PCR PRODUCTS REVEALED THESE PHARMACOGENETIC GENOTYPES - CYP2D6 *1/*1 (NORMAL EXTENSIVE METABOLIZER), CYP2C19 *1/*19 (NORMAL EXTENSIVE METABOLIZER), CYP3A4 *1/*1 (NORMAL EXTENSIVE METABOLIZER), CYP2B6 *1/*6 (INTERMEDIATE METABOLIZER), CYP1A2 -2467>DELT - T/DELT, -163C>A (NORMAL EXTENSIVE METABOLIZER), SLC6A4 (HETEROZYGOUS FOR L/S PROMOTER POLYMORPHISM; INTERMEDIATE RESPONSE); HTR2A (HETEROZYOGOUS FOR -1438G>A; INTERMEDIATE ACTIVITY)
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  1 YEAR
Age at Diagnosis:  12 YEARS; DIAGNOSED BY A GENETICIST
In Utero History Information
Birth History Information
Additional Information:  FULL TERM (AT LEAST 37 WEEKS); 8 LBS 4 OZ AT BIRTH
Dysmorphic Features
Additional Information:  HEAD IS ATRAUMATIC, NORMOCEPHALIC; HYPEREXTENSIBLE SKIN
Neurological Symptoms
Hypotonia
Additional Information:  ANOREXIA; IMPAIRED FUNCTIONAL MOBILITY, BALANCE, GAIT, AND ENDURANCE
Optical and Audiological Symptoms
Defective vision
Nystagmus
Additional Information:  HORIZONTAL NYSTAGMUS
Musculoskeletal Symptoms
Additional Information:  PROXIMAL LIMB MUSCLE WEAKNESS; FINE TREMOR
Developmental Milestones
Global developmental delay
Additional Information:  SPEECH IS 90% INTELLIGIBLE; RESPONSIVE SMILE AT 1-2 MO, SIT WITHOUT SUPPORT AT 6-7 MO, ROLL OVER ON TIME, WALK WELL AT 18 MO
Gastrointestinal Symptoms
Eating difficulties
Additional Information:  ANOREXIA, PICKY EATER, MEAT IS CUT SMALL; DYSPHAGIA
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Anxiety
Behavioral problems
Aggression
Intellectual Disability:  Mild
Additional Information:  ANXIOUS, OPPOSITIONAL, DEFIANT; EYE CONTACT IS FAIR; PRIOR DIAGNOSIS OF ADHD AT AGE 7 YEARS; MILD COGNITIVE IMPAIRMENT; TROUBLE CONCENTRATING; WEIGHT IS 6 %ILE AND HEIGHT IS 16 %ILE BASED ON CDC 2-20
Additional Information
Uncategorized Symptoms:  ALSO HAS MARFAN SYNDROME; 2021 ICD-10-CM DIAGNOSIS CODE E88.40: MITOCHONDRIAL METABOLISM DISORDER
Testing Performed
Cognitive and Behavioral Testing:  NORMAL BRAIN MRI; IS NOT ON AN IEP (INDIVIDUALIZED EDUCATION PLAN); DOING WELL IN SCHOOL; GRADES ARE B'S AND C'S
Uncategorized Testing:  PREVIOUS SURGERY: LENS REPLACEMENT
Treatments and Assistive Devices
Additional Testing:  DEVICES: WEARS GLASSES; PREVIOUS PT AND OT, BUT NONE CURRENTLY
Medications
 LEUCOVORIN CALCIUM; MITCHONDRIAL COCKTAIL: COQ10, RIBOFLAVIN, CREATINE, ALPHA-LIPOIC ACID, FOLINIC ACID
Family History
 FAMILY HISTORY IS SIGNIFICANT FOR DILATED AORTIC ROOT, LENS DISLOCATION, CLINICAL DIAGNOSIS OF MARFAN SYNDROME; NO CONSANGUINITY; MOTHER HAS ARTHRITIS, ANXIETY, DEPRESSION, OBESITY; FATHER HAS HIGH BLOOD PRESSURE AND MARFAN SYNDROME; A BROTHER HAS LEIGH SYNDROME, GLOBAL DEVELOPMENTAL DELAYS, TREMORS, INTELLECTUAL DISABILITY, AWKWARD GAIT; A SECOND BROTHER HAS SUSPECTED MARFAN SYNDROME; ANOTHER SISTER HAS SUSPECTED MARFAN SYNDROME; YOUNGEST BROTHER AND SISTER ARE HEALTHY; 4 MATERNAL UNCLES, 3 MATERNAL AUNTS, MATERNAL GRANDFATHER AND MATERNAL GRANDMOTHER ARE HEALTHY; 2 PATERNAL AUNTS AND 2 PATERNAL UNCLES HAVE MARFAN SYNDROME; PATERNAL UNCLE AND WIFE STRUGGLED WITH INFERTILITY AND THEIR ONLY CHILD HAS AN ABSENT CEREBELLUM; PATERNAL GRANDFATHER HAS MARFAN SYNDROME AND DIABETES MELLITUS; PATERNAL GRANDMOTHER IS IN GOOD HEALTH; PATERNAL GREAT UNCLE HAS ACUTE MYOCARDIAL INFARCTION AND MARFAN SYNDROME
Remarks See Phenotypic Data tab. Clinically affected; has two affected siblings in family 3515: GM28020 (brother) and GM28021 (brother). Carrier parents are GM28022 (mother) and GM28023 (father).

External Links

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Gene Cards FBN1
MTATP6
SURF1
Gene Ontology GO:0001501 skeletal development
GO:0004129 cytochrome-c oxidase activity
GO:0005201 extracellular matrix structural constituent
GO:0005509 calcium ion binding
GO:0005578 extracellular matrix
GO:0005615 extracellular space
GO:0005739 mitochondrion
GO:0005746 mitochondrial electron transport chain
GO:0006118 electron transport
GO:0007275 development
GO:0007601 visual perception
GO:0008535 cytochrome c oxidase biogenesis
GO:0009060 aerobic respiration
GO:0016021 integral to membrane
GO:0019866 inner membrane
NCBI Gene Gene ID:2200
Gene ID:6834
NCBI GTR 134797 FIBRILLIN 1; FBN1
154700 MARFAN SYNDROME; MFS
185620 SURFEIT 1; SURF1
256000 LEIGH SYNDROME; LS
OMIM 134797 FIBRILLIN 1; FBN1
154700 MARFAN SYNDROME; MFS
185620 SURFEIT 1; SURF1
256000 LEIGH SYNDROME; LS
Omim Description LEIGH SYNDROME
  NECROTIZING ENCEPHALOPATHY, INFANTILE SUBACUTE, OF LEIGH; SNE

Culture Protocols

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Cumulative PDL at Freeze 7.2
Passage Frozen 3
Split Ratio 1:2
Temperature 37 C
Percent CO2 5%
Percent O2 3%
Medium Eagles Minimum Essential Medium with Earle's salts:Dulbecco's modified MEM with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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