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GM28013 Fibroblast

Description:

LEIGH SYNDROME; LS
SURFEIT 1; SURF1

Affected:

Yes

Sex:

Female

Age:

4 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Race Asiatic Indian
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
ISCN 46,XX[20]
Species Homo sapiens
Common Name Human
Remarks See "Phenotypic Data" Tab; unaffected carrier mother is GM28014 (fibroblast).

Characterizations

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PDL at Freeze 8.46
Passage Frozen 3
 
Gene SURF1
Chromosomal Location 9q34.2
Allelic Variant 1 185620.0006; LEIGH SYNDROME
Identified Mutation c.751C>T (p.Q251X); In their family G with mitochondrial complex IV deficiency nuclear type 1 (MC4DN1; 220100) manifest as Leigh syndrome, Tiranti et al. (1998) found homozygosity for a 751C-T transition in exon 7 of the SURF1 gene, resulting in a change from gln to stop at codon 251. Tiranti et al. (1999) reported monozygotic twin females with Leigh syndrome as a result of inheritance of this mutation through uniparental disomy of maternal chromosome 9.
 
Gene SURF1
Chromosomal Location 9q34.2
Allelic Variant 2 p.Thr266AsnfsX26; LEIGH SYNDROME
Identified Mutation c.796dupA (p.Thr266AsnfsX26)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 4 YR
Sex Female
Age of Onset(If not a control) 18 MO
Age at Diagnosis(If not a control) 2 YR
Racial Category Asiatic Indian
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  WHOLE EXOME SEQUENCING OF THIS INDIVIDUAL'S DNA IDENTIFIED PATHOGENIC/LIKELY PATHOGENIC AUTOSOMAL RECESSIVE COMPOUND HETEROZYGOUS VARIANTS IN THE SURF1 GENE (NM_003172.2): PATERNALLY INHERITED C.751C>T (P.Q251*) IN EXON 7 AND MATERNALLY INHERITED C.796DUPA (P.T266NFS*26) IN EXON 8; READS WERE ALIGNED TO HUMAN GENOME BUILD GRCH37/UCSC HG19
Zygosity:  Compound Heterozygous
Other variants:  HAS A PATERNALLY INHERITED COPY NUMBER VARIANT CONFIRMED BY EXOME SEQUENCING: DUPLICATION AT 4Q35.1Q35.2; MITOCHONDRIAL SEQUENCE ANALYSIS AND DELETION TESTING OF THE MITOCHONDRIAL GENOME REVEALED THAT THIS INDIVIDUAL IS HOMOPLASMIC FOR A MATERNALLY INHERITED VARIANT OF UNKNOWN CLINICAL SIGNIFICANCE: M.8953A>G (P.ILE143VAL)
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  18 MONTHS
Age at Diagnosis:  DIAGNOSED AT 2 YEARS OF AGE BY A GENETICIST
In Utero History Information
Additional Information:  BORN AT TERM; UNCOMPLICATED PREGNANCY; DEVELOPED BRADYCARDIA DURING DELIVERY
Birth History Information
Failure to thrive
Caesarian section
Additional Information:  EMERGENCY C-SECTION DUE TO BRADYCARDIA; DIFFICULTY GAINING WEIGHT AFTER 7 MONTHS OF AGE
Dysmorphic Features
Additional Information:  CONGENITAL BILATERAL PTOSIS - RESOLVED AT 2 YEARS; WEAK FACIAL MUSCLES
Neurological Symptoms
Ataxia
Hypotonia
Additional Information:  SEVERE HYPOTONIA WITH AXIAL SLIPPAGE; HYPERREFLEXIA
Optical and Audiological Symptoms
Musculoskeletal Symptoms
Developmental Milestones
Delayed gross motor skills
Sitting Without Assistance:  Achieved and maintained
Additional Information:  DEVELOPMENT: SAT ALONE AT 6 MONTHS, PULLED TO STAND AT 7 MONTHS, CREEPED AT 8 MONTHS, 1ST WORDS AT 10 MONTHS; UNABLE TO WALK AT 19 MONTHS; CURRENT MOTOR SKILLS: SITS ALONE AND REACHES FOR OBJECTS, ABLE TO STAND AND CREEP BUT UNABLE TO STAND INDEPENDENTLY; APPROPRIATE LANGUAGE DEVELOPMENT; REGRESSION IN MOTOR SKILLS AT 2 YRS OF AGE, - INCREASED FALLS AND DECREASED ABILITY TO STAND AND CRUISE; ADVANCED LANGUAGE DEVELOPMENT; SPEECH IS DYSARTHRIC
Gastrointestinal Symptoms
Constipation
Additional Information:  LACTIC ACIDOSIS (56 MG/DL AT 20 MOTHS, REFERENCE IS 4-16)
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Additional Information:  AT RISK TO DEVELOP RECURRENT NECROTIZING DEMYELINATION OF MIDLINE BRAIN STRUCTURES WITH ANY INFECTION
Cognitive and Behavioral Symptoms
Additional Information
Testing Performed
Neurological Testing:  LEIGH SYNDROME DIAGNOSED AFTER BRAIN MRI AT 25 MONTHS OF AGE
Respiratory and Cardiovascular Testing:  NORMAL ECG; MRI SHOWED INVOLVEMENT OF BRAINSTEM, BILATERAL SYMMETRIC LESIONS TO THE BASAL GANGLIA AND PUTAMEN
Metabolic, Hematologic, and Endocrinologic Testing:  AT 19 MONTHS OF AGE, CBC, ALT, AST, T4/TSH AND CREATININE WERE NORMAL; HISTORY OF LACTIC ACIDOSIS (56 MG/DL, REFERENCE IS 4-16); ELEVATED PYRUVATE IN URINE ORGANIC ACIDS TEST; ELEVATED ALANINE IN PLASMA AMINO ACIDS
Treatments and Assistive Devices
Occupational therapy
Physical therapy
Speech therapy
Wheelchair or ambulation devices
Additional Testing:  BRACES; SURGERY: G-TUBE
Medications
 THIMINE, MVI (MULTIPLE VITAMINS INJECTION)
Family History
 UNAFFECTED CARRIER MOTHER IS GM28014 (FIBRO); NO HISTORY OF CONSANGUINITY, PROBLEMS SIMILAR TO THAT OF SUBJECT, OR MENTAL RETARDATION, SEIZURES, MUSCLE WEAKNESS, VISUAL LOSS, HEARING LOSS, UNEXPLAINED DEATHS, SHORT STATURE, POOR WEIGHT GAIN, KIDNEY PROBLEMS, LIVER PROBLEMS, CONSTIPATION, LIVER FAILURE, CARDIOMYOPATHY, EARLY ONSET, STROKES, OR DIABETES; MOTHER HAD SINGLE 1ST TRIMESTER MISCARRIAGE; VARIANT SEGREGATION ANALYSIS BY WES REVEALED THAT THE MOTHER CARRIES THE C.796DUPA (P.T266NFSX26) VARIANT AND THE FATHER (NOT IN REPOSITORY) CARRIES THE C.751C>T(P.Q251X) VARIANT IN SURF1; MOTHER CARRIES THE MITOCHONDRIAL DNA VARIANT M.8953A>G (P.ILE143VAL); FATHER CARRIES THE COPY NUMBER VARIANT DUPLICATION AT 4Q35.1Q35.2
Remarks See "Phenotypic Data" Tab; unaffected carrier mother is GM28014 (fibroblast).

External Links

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Gene Cards MTATP6
SURF1
Gene Ontology GO:0004129 cytochrome-c oxidase activity
GO:0005739 mitochondrion
GO:0005746 mitochondrial electron transport chain
GO:0006118 electron transport
GO:0008535 cytochrome c oxidase biogenesis
GO:0009060 aerobic respiration
GO:0016021 integral to membrane
GO:0019866 inner membrane
NCBI Gene Gene ID:6834
NCBI GTR 185620 SURFEIT 1; SURF1
256000 LEIGH SYNDROME; LS
OMIM 185620 SURFEIT 1; SURF1
256000 LEIGH SYNDROME; LS
Omim Description LEIGH SYNDROME
  NECROTIZING ENCEPHALOPATHY, INFANTILE SUBACUTE, OF LEIGH; SNE

Culture Protocols

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Cumulative PDL at Freeze 8.46
Passage Frozen 3
Split Ratio 1:3
Temperature 37 C
Percent CO2 5%
Percent O2 3%
Medium Eagles Minimum Essential Medium with Earle's salts:Dulbecco's modified MEM with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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