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GM27993 Fibroblast from Skin, Skin

Description:

ENCEPHALOPATHY OF CHILDHOOD (LENNOX-GASTAUT SYNDROME)
THAP DOMAIN CONTAINING 12

Affected:

Yes

Sex:

Female

Age:

46 MO (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Biopsy Source Skin
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Sample Source Fibroblast from Skin, Skin
Race White
Ethnicity Not Hispanic/Latino
Ethnicity German, English, Scottish
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks See Phenotypic Data Tab. LCL is GM27991; affected sister is GM27988 (lymph) and GM27990 (fibro); carrier mother is GM27994 (lymph) and GM27995 (fibro); carrier father is GM27996 (lymph) and GM27997 (fibro).

Characterizations

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PDL at Freeze 6.68
Passage Frozen 3
 
IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin Confirmed by LINE assay
 
Gene THAP12
Chromosomal Location 11q13.5
Allelic Variant 1 p.Glu105AsnfsTer2; ENCEPHALOPATHY OF CHILDHOOD (LENNOX-GASTAUT SYNDROME)
Identified Mutation c.312delA (p.Glu105AsnfsTer2)
 
Gene THAP12
Chromosomal Location 11q13.5
Allelic Variant 2 p.Pro277Thr; ENCEPHALOPATHY OF CHILDHOOD (LENNOX-GASTAUT SYNDROME)
Identified Mutation c.829C>A (p.Pro277Thr)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 46 MO
Sex Female
Age at Diagnosis(If not a control) 3 MO
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  WHOLE GENOME SEQUENCING REVEALED COMPOUND HETEROZYGOUS AUTOSOMAL RECESSIVE MUTATIONS IN THAP12 INHERITED IN TRANS: PATERNALLY INHERITED MISSENSE VARIANT C.829C>A (P.PRO277THR), 11:76352321; MATERNALLY INHERITED FRAMESHIFT VARIANT IN EXON 3 C.312DELA (P.GLU105ASNFSTER2), 11:76360961 (NM_004705). READS WERE ALIGNED TO HUMAN GENOME BUILD 38 (HG38).
Zygosity:  Compound Heterozygous
Other variants:  EPILEPSY PANEL REVEALED A HETEROZYGOUS VARIANT OF UNCERTAIN SIGNIFICANCE IN THE CLN5 GENE
Age of Symptom Onset and Age at Diagnosis
Age at Diagnosis:  3 MONTHS
In Utero History Information
Birth History Information
Additional Information:  NEWBORN FEEDING PROBLEMS
Dysmorphic Features
Additional Information:  SMALL FOR AGE
Neurological Symptoms
Hypertonia
Hypotonia
Seizures
Additional Information:  EPILEPTIC ENCEPHALOPATHY; SEVERE HYPOTONIA; RECURRENT INFANTILE SPASMS WITH INTRACTABLE EPILEPSY; MULTIFOCAL TONIC SEIZURES; PARTIAL IDIOPATHIC EPILEPSY WITH SEIZURES OF LOCALIZED ONSET, INTRACTABLE, WITH STATUS EPILEPTICUS; EPILEPTIC ENCEPHALOPATHY; HYPSARRHYTHMIA EVOLVING TO A SLOW SPIKE WAVE PATTERN; CENTRAL HYPOTONIA WITH AXIAL HYPERTONIA; CLONUS; FOCAL EPILEPSY; CONVULSIONS; SIALORRHEA
Optical and Audiological Symptoms
Additional Information:  CORTICAL VISUAL IMPAIRMENT; HYPERMETROPIA OF BOTH EYES; ASTIGMATISM OF BOTH EYES
Musculoskeletal Symptoms
Additional Information:  OSTEOPENIA
Developmental Milestones
Global developmental delay
Additional Information:  GLOBAL DEVELOPMENTAL DELAYS WITH REGRESSION
Gastrointestinal Symptoms
Eating difficulties
Additional Information:  FEEDING DIFFICULTIES; OCCULT BLOOD IN STOOLS; G-TUBE DEPENDENCY; ORAL PHASE DYSPHAGIA; DIARRHEA
Genitourinary Symptoms
Urinary tract infection
Respiratory and Cardiovascular Symptoms
Additional Information:  RESTRICTIVE LUNG DISEASE; AIRWAY CLEARANCE IMPAIRMENT; ASPIRATION INTO RESPIRATORY TRACT
Cognitive and Behavioral Symptoms
Sleep disturbances
Additional Information:  ABNORMAL SLEEP PATTERN; OBSTRUCTIVE SLEEP APNEA
Additional Information
Uncategorized Symptoms:  ANEMIA; ADRENAL INSUFFICIENCY; CORTISOL DEFICIENCY; HYPONATREMIA
Testing Performed
Neurological Testing:  BRAIN MRI REPORTEDLY NONDIAGNOSTIC
Metabolic, Hematologic, and Endocrinologic Testing:  BIOCHEMICAL TESTING REPORTEDLY NONDIAGNOSTIC; HISTORY OF ELEVATED LIVER FUNCTION TESTS
Uncategorized Testing:  CHROMOSOMAL MICROARRAY REPORTEDLY NONDIAGNOSTIC
Treatments and Assistive Devices
Additional Testing:  G-TUBE DEPENDENCE; BIPAP DEPENDENCE
Medications
 HIGH DOSE STEROID (ACTH) CLEARED INFANTILE SPASMS AND HYPSARRHYTHMIA
Family History
 SISTER (GM27988, GM27990) HAS SAME CONDITION; MUTATIONS INHERITED FROM THE PARENTS (GM27994, GM27995, GM27996, GM27997). NO OTHER FAMILY HISTORY IN PAST GENERATIONS.

External Links

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Gene Cards THAP12
Gene Ontology GO:0003677 DNA binding
GO:0006445 regulation of translation
GO:0006950 response to stress
GO:0007165 signal transduction
GO:0008285 negative regulation of cell proliferation
GO:0046983 protein dimerization activity
NCBI Gene Gene ID:5612
NCBI GTR 606369 MACROCEPHALY AND EPILEPTIC ENCEPHALOPATHY
607374 PRKR INHIBITOR, REPRESSOR OF; PRKRIR
OMIM 606369 MACROCEPHALY AND EPILEPTIC ENCEPHALOPATHY
607374 PRKR INHIBITOR, REPRESSOR OF; PRKRIR
Omim Description ENCEPHALOPATHY OF CHILDHOOD

Culture Protocols

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Cumulative PDL at Freeze 6.68
Passage Frozen 3
Split Ratio 1:3
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Eagle's Minimum Essential Medium with Earle's salts and non-essential amino acids with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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