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GM27991 LCL from B-Lymphocyte

Description:

ENCEPHALOPATHY OF CHILDHOOD (LENNOX-GASTAUT SYNDROME)
THAP DOMAIN CONTAINING 12

Affected:

Yes

Sex:

Female

Age:

46 MO (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Race White
Ethnicity Not Hispanic/Latino
Ethnicity German, English, Scottish
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks See Phenotypic Data Tab. Fibroblast is GM27993; affected sister is GM27988 (lymph) and GM27990 (fibro); carrier mother is GM27994 (lymph) and GM27995 (fibro): carrier father is GM27996 (lymph) and GM27997 (fibro).

Characterizations

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Gene THAP12
Chromosomal Location 11q13.5
Allelic Variant 1 p.Glu105AsnfsTer2; ENCEPHALOPATHY OF CHILDHOOD (LENNOX-GASTAUT SYNDROME)
Identified Mutation c.312delA (p.Glu105AsnfsTer2)
 
Gene THAP12
Chromosomal Location 11q13.5
Allelic Variant 2 p.Pro277Thr; ENCEPHALOPATHY OF CHILDHOOD (LENNOX-GASTAUT SYNDROME)
Identified Mutation c.829C>A (p.Pro277Thr)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 46 MO
Sex Female
Age at Diagnosis(If not a control) 3 MO
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  WHOLE GENOME SEQUENCING REVEALED COMPOUND HETEROZYGOUS AUTOSOMAL RECESSIVE MUTATIONS IN THAP12 INHERITED IN TRANS: PATERNALLY INHERITED MISSENSE VARIANT C.829C>A (P.PRO277THR), 11:76352321; MATERNALLY INHERITED FRAMESHIFT VARIANT IN EXON 3 C.312DELA (P.GLU105ASNFSTER2), 11:76360961 (NM_004705). READS WERE ALIGNED TO HUMAN GENOME BUILD 38 (HG38).
Zygosity:  Compound Heterozygous
Other variants:  EPILEPSY PANEL REVEALED A HETEROZYGOUS VARIANT OF UNCERTAIN SIGNIFICANCE IN THE CLN5 GENE
Age of Symptom Onset and Age at Diagnosis
Age at Diagnosis:  3 MONTHS
In Utero History Information
Birth History Information
Additional Information:  NEWBORN FEEDING PROBLEMS
Dysmorphic Features
Additional Information:  SMALL FOR AGE
Neurological Symptoms
Hypertonia
Hypotonia
Seizures
Additional Information:  EPILEPTIC ENCEPHALOPATHY; SEVERE HYPOTONIA; RECURRENT INFANTILE SPASMS WITH INTRACTABLE EPILEPSY; MULTIFOCAL TONIC SEIZURES; PARTIAL IDIOPATHIC EPILEPSY WITH SEIZURES OF LOCALIZED ONSET, INTRACTABLE, WITH STATUS EPILEPTICUS; EPILEPTIC ENCEPHALOPATHY; HYPSARRHYTHMIA EVOLVING TO A SLOW SPIKE WAVE PATTERN; CENTRAL HYPOTONIA WITH AXIAL HYPERTONIA; CLONUS; FOCAL EPILEPSY; CONVULSIONS; SIALORRHEA
Optical and Audiological Symptoms
Additional Information:  CORTICAL VISUAL IMPAIRMENT; HYPERMETROPIA OF BOTH EYES; ASTIGMATISM OF BOTH EYES
Musculoskeletal Symptoms
Additional Information:  OSTEOPENIA
Developmental Milestones
Global developmental delay
Additional Information:  GLOBAL DEVELOPMENTAL DELAYS WITH REGRESSION
Gastrointestinal Symptoms
Eating difficulties
Additional Information:  FEEDING DIFFICULTIES; OCCULT BLOOD IN STOOLS; G-TUBE DEPENDENCY; ORAL PHASE DYSPHAGIA; DIARRHEA
Genitourinary Symptoms
Urinary tract infection
Respiratory and Cardiovascular Symptoms
Additional Information:  RESTRICTIVE LUNG DISEASE; AIRWAY CLEARANCE IMPAIRMENT; ASPIRATION INTO RESPIRATORY TRACT
Cognitive and Behavioral Symptoms
Sleep disturbances
Additional Information:  ABNORMAL SLEEP PATTERN; OBSTRUCTIVE SLEEP APNEA
Additional Information
Uncategorized Symptoms:  ANEMIA; ADRENAL INSUFFICIENCY; CORTISOL DEFICIENCY; HYPONATREMIA
Testing Performed
Neurological Testing:  BRAIN MRI REPORTEDLY NONDIAGNOSTIC
Metabolic, Hematologic, and Endocrinologic Testing:  BIOCHEMICAL TESTING REPORTEDLY NONDIAGNOSTIC; HISTORY OF ELEVATED LIVER FUNCTION TESTS
Uncategorized Testing:  CHROMOSOMAL MICROARRAY REPORTEDLY NONDIAGNOSTIC
Treatments and Assistive Devices
Additional Testing:  G-TUBE DEPENDENCE; BIPAP DEPENDENCE
Medications
 HIGH DOSE STEROID (ACTH) CLEARED INFANTILE SPASMS AND HYPSARRHYTHMIA
Family History
 SISTER (GM27988, GM27990) HAS SAME CONDITION; MUTATIONS INHERITED FROM THE PARENTS (GM27994, GM27995, GM27996, GM27997). NO OTHER FAMILY HISTORY IN PAST GENERATIONS.

External Links

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Gene Cards THAP12
Gene Ontology GO:0003677 DNA binding
GO:0006445 regulation of translation
GO:0006950 response to stress
GO:0007165 signal transduction
GO:0008285 negative regulation of cell proliferation
GO:0046983 protein dimerization activity
NCBI Gene Gene ID:5612
NCBI GTR 606369 MACROCEPHALY AND EPILEPTIC ENCEPHALOPATHY
607374 PRKR INHIBITOR, REPRESSOR OF; PRKRIR
OMIM 606369 MACROCEPHALY AND EPILEPTIC ENCEPHALOPATHY
607374 PRKR INHIBITOR, REPRESSOR OF; PRKRIR
Omim Description ENCEPHALOPATHY OF CHILDHOOD

Culture Protocols

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Split Ratio 1:3
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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