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GM27899 Fibroblast from Skin, Skin

Description:

MYOCLONIC-ATONIC EPILEPSY; MAE
SOLUTE CARRIER FAMILY 6 (NEUROTRANSMITTER TRANSPORTER GABA) MEMBER 1; SLC6A1

Affected:

Yes

Sex:

Male

Age:

2 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Biopsy Source Skin
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Sample Source Fibroblast from Skin, Skin
Race White
Ethnicity Not Hispanic/Latino
Country of Origin USA
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks See Phenotypic Data Tab

Characterizations

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PDL at Freeze 5.27
Passage Frozen 2
 
IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin Confirmed by LINE assay
 
Gene SLC6A1
Chromosomal Location 3p25.3
Allelic Variant 1 137165..0005; MYOCLONIC-ATONIC EPILEPSY
Identified Mutation c.863C>T (p.Ala288Val)
 
Gene TRIO
Chromosomal Location 5p15.2
Allelic Variant 1 pArg2707*; INTELLECTUAL DEVELOPMENTAL DISORDER, AUTOSOMAL DOMINANT 44, WITH MICROCEPHALY; MRD44
Identified Mutation c.8119C>T (p.Arg2707*)

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 2 YR
Sex Male
Age at Diagnosis(If not a control) 19 MO
Hispanic or Latino/Not Hispanic or Latino Not Hispanic/Latino
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  WHOLE EXOME SEQUENCING DETECTED A MUTATION IN SLC6A1 C.863C>T (P.ALA288VAL)
Zygosity:  Heterozygous
Notes: VARIANT IS POSSIBLY MOSAIC IN MOTHER
Other variants:  WHOLE EXOME SEQUENCING REVEALED A PATHOGENIC VARIANT IN TRIO C.8119C>T (P.ARG2707*)
Age of Symptom Onset and Age at Diagnosis
Age of Symptom Onset:  AT BIRTH
Age at Diagnosis:  19 MONTHS
In Utero History Information
Birth History Information
Dysmorphic Features
Neurological Symptoms
Chorea
Additional Information:  TREMOR; DYSKINESIAS; EXTRA-AXIAL CEREBROSPINAL FLUID ACCUMULATION
Optical and Audiological Symptoms
Musculoskeletal Symptoms
Developmental Milestones
Gastrointestinal Symptoms
Gastrointestinal reflux
Genitourinary Symptoms
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Additional Information
Testing Performed
Neurological Testing:  ABNORMAL EEG (MULTIFOCAL EPILEPTIC DISCHARGES)
Respiratory and Cardiovascular Testing:  NORMAL EKG
Treatments and Assistive Devices
Occupational therapy
Physical therapy
Speech therapy
Medications
Family History

External Links

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Gene Cards SLC6A1
Gene Ontology GO:0005331 gamma-aminobutyric acid transporter activity
GO:0005332 gamma-aminobutyric acid:sodium symporter activity
GO:0005624 membrane fraction
GO:0005887 integral to plasma membrane
GO:0006836 neurotransmitter transport
GO:0007268 synaptic transmission
GO:0015293 symporter activity
NCBI Gene Gene ID:6529
NCBI GTR 137165 SOLUTE CARRIER FAMILY 6 (NEUROTRANSMITTER TRANSPORTER, GABA), MEMBER 1; SLC6A1
616421 MYOCLONIC-ATONIC EPILEPSY; MAE
OMIM 137165 SOLUTE CARRIER FAMILY 6 (NEUROTRANSMITTER TRANSPORTER, GABA), MEMBER 1; SLC6A1
616421 MYOCLONIC-ATONIC EPILEPSY; MAE

Culture Protocols

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Cumulative PDL at Freeze 5.27
Passage Frozen 2
Split Ratio 1:6
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Eagle's Minimum Essential Medium with Earle's salts and non-essential amino acids with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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