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GM27453 Fibroblast from Skin, Skin

Description:

SCHINZEL-GIEDION MIDFACE-RETRACTION SYNDROME
SET-BINDING PROTEIN 1; SETBP1

Affected:

Yes

Sex:

Female

Age:

4 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • Publications
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
PIGI Consented Sample
Biopsy Source Skin
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Sample Source Fibroblast from Skin, Skin
Race White
Country of Origin USA
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks See Phenotypic Data tab; lymph is GM27452.

Characterizations

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PDL at Freeze 2.87
Passage Frozen 4
 
IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin Confirmed by LINE assay
 
Gene SETBP1
Chromosomal Location 18q12.3
Allelic Variant 1 S867R; SCHINZEL-GIEDION SYNDROME
Identified Mutation c.2601C>A; S867R

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 4 YR
Sex Female
Racial Category White
Country USA
 
Data Elements
Clinical Element Type: General NIGMS Catalog Remarks
  (Baseline)
Mutation Information
Gene, variant, consequence, and exon number:  DE NOVO MUTATION IN SETBP1: C.2601C>A (P.S867R (HET.) IN EXON 4
Zygosity:  Heterozygous
Age of Symptom Onset and Age at Diagnosis
In Utero History Information
Birth History Information
Dysmorphic Features
Microcephaly
Additional Information:  MID-FACE RETRACTION; SGS FACIAL GESTALT
Neurological Symptoms
Seizures
Optical and Audiological Symptoms
Defective vision
Defective hearing
Alacrima
Additional Information:  CORTICAL/CENTRAL VISUAL AND AUDITORY IMPAIRMENT (STRUCTURAL VISUAL AND AUDITORY PATHWAYS INTACT WITH IMPAIRED CENTRAL PROCESSING OF INFORMATION); DID NOT SHED TEARS FOR FIRST 5 YEARS OF LIFE, WILL SHED A FEW IF REALLY UPSET
Musculoskeletal Symptoms
Developmental Milestones
Global developmental delay
Additional Information:  NON-VERBAL
Gastrointestinal Symptoms
Constipation
Eating difficulties
Additional Information:  GASTROINTESTINAL REFLUX, IMPAIRED SWALLOW, DELAYED GIT MOTILITY WITH CONSTIPATION; 100% FED VIA GASTROSTOMY TUBE
Genitourinary Symptoms
Abnormalities of the ureter
Urinary tract infection
Additional Information:  ATONIC BLADDER WITH URETERAL REFLUX CAUSING RECURRENT URINARY TRACT INFECTIONS; DOES NOT HAVE HYDRONEPHROSIS
Respiratory and Cardiovascular Symptoms
Cognitive and Behavioral Symptoms
Sleep disturbances
Learning disability
Intellectual Disability:  Severe
Additional Information:  PROFOUND MULTIPLE LEARNING DISABILITIES
Additional Information
Testing Performed
Treatments and Assistive Devices
Medications
Family History
 MOTHER AND FATHER DO NOT CARRY THE MUTATION IN SETBP1
Remarks See Phenotypic Data tab; lymph is GM27452.

Publications

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Acuna-Hidalgo R, Deriziotis P, Steehouwer M, Gilissen C, Graham SA, van Dam S, Hoover-Fong J, Telegrafi AB, Destree A, Smigiel R, Lambie LA, Kayserili H, Altunoglu U, Lapi E, Uzielli ML, Aracena M, Nur BG, Mihci E, Moreira LM, Borges Ferreira V, Horovitz DD, da Rocha KM, Jezela-Stanek A, Brooks AS, Reutter H, Cohen JS, Fatemi A, Smitka M, Grebe TA, Di Donato N, Deshpande C, Vandersteen A, Marques Lourenço C, Dufke A, Rossier E, Andre G, Baumer A, Spencer C, McGaughran J, Franke L, Veltman JA, De Vries BB, Schinzel A, Fisher SE, Hoischen A, van Bon BW, Overlapping SETBP1 gain-of-function mutations in Schinzel-Giedion syndrome and hematologic malignancies PLoS genetics13:e1006683 2016
PubMed ID: 28346496

External Links

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Gene Cards SETBP1
NCBI GTR 269150 SCHINZEL-GIEDION MIDFACE RETRACTION SYNDROME
611060 SET-BINDING PROTEIN 1; SETBP1
OMIM 269150 SCHINZEL-GIEDION MIDFACE RETRACTION SYNDROME
611060 SET-BINDING PROTEIN 1; SETBP1
Omim Description SCHINZEL-GIEDION MIDFACE-RETRACTION SYNDROME
  SGS

Culture Protocols

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Passage Frozen 4
Split Ratio 1:5
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Eagle's Minimum Essential Medium with Earle's salts and non-essential amino acids with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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