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GM22208 LCL from B-Lymphocyte

Description:

PROPIONIC ACIDEMIA
PROPIONYL-COA CARBOXYLASE, ALPHA SUBUNIT; PCCA

Affected:

Yes

Sex:

Female

Age:

2 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • Publications
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Race White
Family Member 1
Family History N
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks Clinically affected; diagnosed at 3 days of age by newborn screening; failure to thrive; no family history; mitral valve regurgitation; normal gut motility; reflux; no eating by mouth; GJ-tube; vomiting once a month or more; acute neutropenia; chronic anemia; acute low platelets; walked at 16 months of age; talked at age 1 year; mildly impaired cognitive ability; on metabolic formula and levocarnitine; donor subject is a compound heterozygote: allele 1: has a substitution of arginine for lysine at codon 298 in exon 11 of the PCCA gene [Lys298Arg (K298R)] and allele 2: has a deletion of exons 13-20

Characterizations

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IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin confirmed by LINE assay
 
Gene PCCA
Chromosomal Location 13q32
Allelic Variant 1 K298R; PROPIONIC ACIDEMIA
Identified Mutation LYS298ARG
 
Gene PCCA
Chromosomal Location 13q32
Allelic Variant 2 deletion of exons 13-20; PROPIONIC ACIDEMIA
Identified Mutation DEL EX13-20

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 2 YR
Sex Female
Age at Diagnosis(If not a control) 3 DA
Racial Category White
 
Data Elements
Clinical Element Type: Propionic Acidemia
  (Baseline)
Neonatal Data
Was this child newborn screened? yes   no  unknown 
If yes, was the result prior to hospitalization yes  no   unknown 
Was child breast-fed? yes   no  unknown 
If yes, duration in months  2 DAYS
Failure to thrive? yes   no  unknown 
Molecular/Enzyme Laboratory Test Results
Which Gene: PCCA? yes   no  unknown 
Which Gene: PCCB?  No Data
Mutations Allele 1  K298R
Mutations Allele 2  DEL EX 13-20
Family History
Are there other family members with PA? yes  no   unknown 
Other affected relatives? yes  no   unknown 
Has the individual passed away?  No Data
Clinical Evaluation
Current weight in kgs  15
Current height in cms  91
Respiratory
Apnea yes  no   unknown 
Tachypnea yes  no   unknown 
Cardiovascular
Cardiomyopathy yes  no   unknown 
Long QT? yes  no   unknown 
If yes, type  No Data
Abdominal/Gastrointestinal
Pancreatitis chronic  acute  never noted  
Kidney problems yes  no   unknown 
Liver transplant yes  no   unknown 
Port-a-cath currently in place   not currently in place  never had one 
Gut motility normal   slow  requires medication  unknown 
Reflux yes   no  unknown 
List medications  PREVACID
Eating by mouth  0%
Tube fed yes   no  unknown 
If yes, what kind  GJ-tube
Vomiting  once a month or more
Are anti-emetics used for vomiting yes  no   unknown 
Neurologic
Basal ganglia damage yes  no   unknown 
If yes, determined by  No Data
Seizures yes  no   unknown 
Autism spectrum disorder yes  no   unknown 
ADD/ADHD yes  no   unknown 
Optic nerve damage yes  no   unknown 
Neutropenia chronic  acute   unknown 
Anemia yes   no  unknown 
If yes, type of anemia  No Data
Immune deficiency yes  no   unknown 
Treated with IVIG  No Data
Low platelets chronic  acute   not applicable  unknown 
Asthma yes  no   unknown 
Secondary hip dysplasia yes  no   unknown 
Broken bones yes  no   unknown 
Short stature yes  no   unknown 
Growth hormone treatment yes  no   unknown 
Osteoporosis yes  no   unknown 
Developmental Evaluation
Walking  100% of the time
Age when first walked  16 MONTHS
Language  age appropriate
Age when first talked  1 YEAR
Congitive ability  mildly impaired
IQ known  untested  unsure  
Metabolic
Is the individual biotin responsive yes  no   unknown 
Episodes of ketoacidosis yes  no  unknown  
Chronic hyperammonemia yes  no   unknown 
Is the individual currently on metabolic formula yes   no  unknown 
If yes, which ones Propimex
Polcyose
Is the individual taking levocarnitine yes   no  unknown 
Other supllements Biotin
Iron
Remarks Clinically affected; diagnosed at 3 days of age by newborn screening; failure to thrive; no family history; mitral valve regurgitation; normal gut motility; reflux; no eating by mouth; GJ-tube; vomiting once a month or more; acute neutropenia; chronic anemia; acute low platelets; walked at 16 months of age; talked at age 1 year; mildly impaired cognitive ability; on metabolic formula and levocarnitine; donor subject is a compound heterozygote: allele 1: has a substitution of arginine for lysine at codon 298 in exon 11 of the PCCA gene [Lys298Arg (K298R)] and allele 2: has a deletion of exons 13-20

Publications

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Yeeok Kang, Seong-Hyeuk Nam, Kyung Sun Park, Yoonjung Kim, Jong-Won Kim, Eunjung Lee, Jung Min Ko, Kyung-A Lee and Inho ParkEmail, DeviCNV: detection and visualization of exon-level copy number variants in targeted next-generation sequencing data BMC Bioinformatics19: 2018
PubMed ID: 30326846

External Links

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Gene Cards PCCA
Gene Ontology GO:0004658 propionyl-CoA carboxylase activity
GO:0005524 ATP binding
GO:0005739 mitochondrion
GO:0006631 fatty acid metabolism
GO:0008152 metabolism
GO:0009374 biotin binding
GO:0016874 ligase activity
GEO GEO Accession No: GSM1050415
GEO Accession No: GSM1050416
NCBI Gene Gene ID:5095
NCBI GTR 232000 PROPIONYL-CoA CARBOXYLASE, ALPHA SUBUNIT; PCCA
606054 PROPIONIC ACIDEMIA
OMIM 232000 PROPIONYL-CoA CARBOXYLASE, ALPHA SUBUNIT; PCCA
606054 PROPIONIC ACIDEMIA
Omim Description PROPIONIC ACIDEMIA

Culture Protocols

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Split Ratio 1:5
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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