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GM22123 LCL from B-Lymphocyte

Description:

PROPIONIC ACIDEMIA
PROPIONIC-COA CARBOXYLASE, BETA SUBUNIT; PCCB

Affected:

Yes

Sex:

Female

Age:

10 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • Publications
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
Biopsy Source Peripheral vein
Cell Type B-Lymphocyte
Tissue Type Blood
Transformant Epstein-Barr Virus
Sample Source LCL from B-Lymphocyte
Race Filipino
Country of Origin CANADA
Family Member 1
Relation to Proband proband
Confirmation Clinical summary/Case history
Species Homo sapiens
Common Name Human
Remarks Clinically affected; affected sister is GM22124; presented at 5 months of age with acute decompensation, lethargy, metabolic acidosis, hyperammonemia, pancytopenia, high glycine and propionic acid in urine; cardiomyopathy; gut motility is normal; 1-50% eating by mouth; g-tube; infrequent vomiting; short stature; growth hormone treatment; walked at age 3 years; language significantly below age level; first talked at age 3 years; cognitive ability mildly impaired; episodes of ketoacidosis; on metabolic formula and levocarnitine; donor subject is a compound heterozygote: one allele has a C>T transition at nucleotide 377 in exon 3 of the PCCB gene (c.377C>T) resulting in a stop at codon 113 [Arg113Ter (R113X)] and the second allele has a T>C transition at nucleotide 1172 in exon 11 (c.1172T>C) resulting in the substitution of serine for phenylalanine at codon 391 [Phe391ser (F391S)]

Characterizations

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IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin Confirmed by LINE assay
 
Gene PCCB
Chromosomal Location 3q21-q22
Allelic Variant 1 R113X; PROPIONIC ACIDEMIA
Identified Mutation ARG113TER
 
Gene PCCB
Chromosomal Location 3q21-q22
Allelic Variant 2 F391S; PROPIONIC ACIDEMIA
Identified Mutation PHE391SER

Phenotypic Data

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Demographic Data
Relation to Proband proband
Age at Sampling 10 YR
Sex Female
Age at Diagnosis(If not a control) 5 MO
Racial Category Filipino
Country CANADA
 
Data Elements
Clinical Element Type: Propionic Acidemia
  (Baseline)
Neonatal Data
Was this child newborn screened? yes  no   unknown 
If yes, was the result prior to hospitalization  No Data
Weight at birth in kgs  3.54
Length at birth in cm  50.8
Was child breast-fed? yes   no  unknown 
If yes, duration in months  4 MONTHS
Failure to thrive? yes   no  unknown 
Molecular/Enzyme Laboratory Test Results
Which Gene: PCCA? yes  no   unknown 
Which Gene: PCCB? yes   no  unknown 
Mutations Allele 1  337C>T
Mutations Allele 2  1172T>C
Family History
Are there other family members with PA? yes   no  unknown 
Number of siblings with PA  ONE
Number of living siblings with PA  ONE
Other affected relatives? yes  no   unknown 
Has the individual passed away? yes  no   unknown 
Clinical Evaluation
Current weight in kgs  30
Current height in cms  129
Respiratory
Apnea yes  no   unknown 
Tachypnea yes  no   unknown 
Cardiovascular
Cardiomyopathy yes   no  unknown 
If yes, type  mild
Age at diagnosis of cardiomyopathy  6 YR
Long QT? yes  no   unknown 
If yes, type  No Data
Abdominal/Gastrointestinal
Pancreatitis chronic  acute  never noted  
Kidney problems yes  no   unknown 
Liver transplant yes  no   unknown 
Port-a-cath currently in place  not currently in place  never had one  
Gut motility normal   slow  requires medication  unknown 
Reflux yes  no   unknown 
Eating by mouth  1-50%
Tube fed yes   no  unknown 
If yes, what kind  G-tube
Vomiting  infrequently
Are anti-emetics used for vomiting yes  no   unknown 
Neurologic
Basal ganglia damage yes  no  unknown  
If yes, determined by  No Data
Seizures yes  no   unknown 
Autism spectrum disorder yes  no   unknown 
ADD/ADHD yes  no   unknown 
Optic nerve damage yes  no  unknown  
Neutropenia chronic  acute  unknown  
Anemia yes  no  unknown  
Immune deficiency yes  no  unknown  
Treated with IVIG  No Data
Low platelets chronic  acute  not applicable   unknown 
Asthma yes  no   unknown 
Secondary hip dysplasia yes  no  unknown  
Broken bones yes  no   unknown 
Short stature yes   no  unknown 
Growth hormone treatment yes   no  unknown 
Osteoporosis yes  no  unknown  
Developmental Evaluation
Walking  100% of the time
Age when first walked  3 YR
Language  slightly below age level
Age when first talked  3 YEARS
Congitive ability  mildly impaired
IQ known  untested  unsure  
Metabolic
Is the individual biotin responsive yes  no   unknown 
Episodes of ketoacidosis yes   no  unknown 
If yes, give frequency  infrequently
Chronic hyperammonemia yes  no   unknown 
Is the individual currently on metabolic formula yes   no  unknown 
If yes, which ones Propimex
Pro-phree
Polcyose
Is the individual taking levocarnitine yes   no  unknown 
If yes, mg/kg  8000MG/DAY
Other supllements
Remarks Clinically affected; affected sister is GM22124; presented at 5 months of age with acute decompensation, lethargy, metabolic acidosis, hyperammonemia, pancytopenia, high glycine and propionic acid in urine; cardiomyopathy; gut motility is normal; 1-50% eating by mouth; g-tube; infrequent vomiting; short stature; growth hormone treatment; walked at age 3 years; language significantly below age level; first talked at age 3 years; cognitive ability mildly impaired; episodes of ketoacidosis; on metabolic formula and levocarnitine; donor subject is a compound heterozygote: one allele has a C>T transition at nucleotide 377 in exon 3 of the PCCB gene (c.377C>T) resulting in a stop at codon 113 [Arg113Ter (R113X)] and the second allele has a T>C transition at nucleotide 1172 in exon 11 (c.1172T>C) resulting in the substitution of serine for phenylalanine at codon 391 [Phe391ser (F391S)]

Publications

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Thomas SP, Denu JM, Short-chain fatty acids activate acetyltransferase p300 eLife10: 2021
PubMed ID: 34677127

External Links

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Gene Cards PCCB
Gene Ontology GO:0004075 biotin carboxylase activity
GO:0004658 propionyl-CoA carboxylase activity
GO:0005739 mitochondrion
GO:0009062 fatty acid catabolism
GO:0009343 biotin carboxylase complex
GO:0016874 ligase activity
NCBI Gene Gene ID:5096
NCBI GTR 232050 PROPIONYL-CoA CARBOXYLASE, BETA SUBUNIT; PCCB
606054 PROPIONIC ACIDEMIA
OMIM 232050 PROPIONYL-CoA CARBOXYLASE, BETA SUBUNIT; PCCB
606054 PROPIONIC ACIDEMIA
Omim Description PROPIONIC ACIDEMIA

Culture Protocols

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Split Ratio 1:3
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not Inactivated
Substrate None specified
Subcultivation Method dilution - add fresh medium
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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