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GM17424 Fibroblast

Description:

XERODERMA PIGMENTOSUM, COMPLEMENTATION GROUP D; XPD
TRICHOTHIODYSTROPHY; TTD ICHTHYOSIFORM ERYTHRODERMA WITH HAIR ABNORMALITY AND MENTAL AND GROWTH RETARDATION, INCLUDED
EXCISION-REPAIR, COMPLEMENTING DEFECTIVE, IN CHINESE HAMSTER, 2; ERCC2

Affected:

Yes

Sex:

Female

Age:

2 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • Publications
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
Class Disorders of Nucleotide and Nucleic Acid Metabolism
Class Repair Defective and Chromosomal Instability Syndromes
Cell Type Fibroblast
Tissue Type Skin
Transformant Untransformed
Race White
Relation to Proband proband
Confirmation Molecular characterization before cell line submission to CCR
Species Homo sapiens
Common Name Human
Remarks Clinically affected; born at 37 weeks gestation; birth weight = 2,140 g; birth length = 44 cm; feeding problems and poor weight gain in first few months of life; hospitalized for pneumonia at ages of 8, 11, and 23 months; all scalp hair was lost within 2-10 days during pneumonia episodes but it did grow back; at age 2 years, length = 70 cm (-5 SD), weight = 6.5 kg (-4 SD), and head circumference = 42 cm (-4 SD); round face with upslanting palpebral fissures, small nose, and slightly receding chin; scalp hair sparse and brittle; nystagmus and convergent strabismus; ichthyosis diagnosed at age 2 years; mild pectus carinatum; mild psychomotor retardation; no neurological symptoms; mild photosensitivity; scanning electron microscopy on hair revealed trichorrhexis nodosa-like fractures with exposure of cortical cells; very low level of cystine in scalp hair (7.59 g nitrogen in cystine per 100 g nitrogen in all amino acids, normal index 14.23); moderate but significant deficiency of DNA repair capacity was demonstrated which appeared to be confined to 6-4 photoproducts with normal excision repair of cyclobutane pyrimidine; cell fusion studies showed that cells from donor subject belong to XP complementation group D; donor subject is a compound heterozygote: one allele has a C>T transition at nucleotide 2050 of the ERCC2/XPD gene [2050C>T] resulting in a substitution of cysteine for arginine at codon 658 [Arg658Cys (R658C)] and the other allele has a G>C transversion at nucleotide 2215 of the ERCC2/XPD gene [2215G>C] resulting in a substitution of arginine for glycine at codon 713 [Gly713Arg (G713R)].

Characterizations

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Passage Frozen 12
 
IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin Confirmed by Nucleoside Phosphorylase,Glucose-6-Phosphate Dehydrogenase, and Lactate Dehydrogenase Isoenzyme Electrophoresis
 
Gene ERCC2
Chromosomal Location 19q13.2-q13.3
Allelic Variant 1 126340.0007; TRICHOTHIODYSTROPHY
Identified Mutation ARG658CYS; On 1 allele of the ERCC2 gene in a girl with trichothiodystrophy (601675), Takayama et al. (Am J Hum Genet 58:263-270, 1996) found a C-to-T transition at nucleotide position 2050, resulting in an arg658-to-cys amino acid change. The causative mutation on the other allele was identified as gly713-to-arg (126340.0008). Ichthyosis and loss of scalp hair occurred intermittently in the patient.
 
Gene ERCC2
Chromosomal Location 19q13.2-q13.3
Allelic Variant 2 126340.0008; TRICHOTHIODYSTROPHY
Identified Mutation GLY713ARG; In a girl with trichothiodystrophy (601675), Takayama et al. (Am J Hum Genet 58:263-270, 1996) found a G-to-C transversion at nucleotide position 2215 of the ERCC2 gene, resulting in a gly713-to-arg amino acid substitution. They identified this mutation in compound heterozygous state with R658C (126340.0007).

Phenotypic Data

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Remarks Clinically affected; born at 37 weeks gestation; birth weight = 2,140 g; birth length = 44 cm; feeding problems and poor weight gain in first few months of life; hospitalized for pneumonia at ages of 8, 11, and 23 months; all scalp hair was lost within 2-10 days during pneumonia episodes but it did grow back; at age 2 years, length = 70 cm (-5 SD), weight = 6.5 kg (-4 SD), and head circumference = 42 cm (-4 SD); round face with upslanting palpebral fissures, small nose, and slightly receding chin; scalp hair sparse and brittle; nystagmus and convergent strabismus; ichthyosis diagnosed at age 2 years; mild pectus carinatum; mild psychomotor retardation; no neurological symptoms; mild photosensitivity; scanning electron microscopy on hair revealed trichorrhexis nodosa-like fractures with exposure of cortical cells; very low level of cystine in scalp hair (7.59 g nitrogen in cystine per 100 g nitrogen in all amino acids, normal index 14.23); moderate but significant deficiency of DNA repair capacity was demonstrated which appeared to be confined to 6-4 photoproducts with normal excision repair of cyclobutane pyrimidine; cell fusion studies showed that cells from donor subject belong to XP complementation group D; donor subject is a compound heterozygote: one allele has a C>T transition at nucleotide 2050 of the ERCC2/XPD gene [2050C>T] resulting in a substitution of cysteine for arginine at codon 658 [Arg658Cys (R658C)] and the other allele has a G>C transversion at nucleotide 2215 of the ERCC2/XPD gene [2215G>C] resulting in a substitution of arginine for glycine at codon 713 [Gly713Arg (G713R)].

Publications

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Vermeulen W, Rademakers S, Jaspers NG, Appeldoorn E, Raams A, Klein B, Kleijer WJ, Hansen LK, Hoeijmakers JH, A temperature-sensitive disorder in basal transcription and DNA repair in humans. Nat Genet27(3):299-303 2001
PubMed ID: 11242112
 
Eveno E, Bourre F, Quilliet X, Chevallier-Lagente O, Roza L, Eker AP, Kleijer WJ, Nikaido O, Stefanini M, Hoeijmakers JH, et al, Different removal of ultraviolet photoproducts in genetically related xeroderma pigmentosum and trichothiodystrophy diseases. Cancer Res55(19):4325-4332 1995
PubMed ID: 7671243
 
Kleijer WJ, Beemer FA, Boom BW, Intermittent hair loss in a child with PIBI(D)S syndrome and trichothiodystrophy with defective DNA repair-xeroderma pigmentosum group D. Am J Med Genet52(2):227-230 1994
PubMed ID: 7802014

External Links

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Gene Cards ERCC2
Gene Ontology GO:0000287 magnesium ion binding
GO:0003677 DNA binding
GO:0004003 ATP-dependent DNA helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0005634 nucleus
GO:0005675 transcription factor TFIIH complex
GO:0006283 transcription-coupled nucleotide-excision repair
GO:0006355 regulation of transcription, DNA-dependent
GO:0006366 transcription from Pol II promoter
GO:0006917 induction of apoptosis
GO:0007605 perception of sound
GO:0016787 hydrolase activity
GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0043139 5' to 3' DNA helicase activity
NCBI Gene Gene ID:2068
Gene ID:7269
NCBI GTR 126340 EXCISION REPAIR, COMPLEMENTING DEFECTIVE, IN CHINESE HAMSTER, 2; ERCC2
278730 XERODERMA PIGMENTOSUM, COMPLEMENTATION GROUP D; XPD
601675 TRICHOTHIODYSTROPHY 1, PHOTOSENSITIVE; TTD1
OMIM 126340 EXCISION REPAIR, COMPLEMENTING DEFECTIVE, IN CHINESE HAMSTER, 2; ERCC2
278730 XERODERMA PIGMENTOSUM, COMPLEMENTATION GROUP D; XPD
601675 TRICHOTHIODYSTROPHY 1, PHOTOSENSITIVE; TTD1
Omim Description TRICHOTHIODYSTROPHY, TYPE 1, INCLUDED; TDD1, INCLUDED
  XERODERMA PIGMENTOSUM IV; XP4TRICHOTHIODYSTROPHY WITH SUN SENSITIVITY, INCLUDED
  XERODERMA PIGMENTOSUM VIII, FORMERLY; XP8, FORMERLY
  XERODERMA PIGMENTOSUM, COMPLEMENTATION GROUP D; XPD
  XP, GROUP D; XPDC
  XP, GROUP H, FORMERLY; XPH, FORMERLY

Culture Protocols

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Passage Frozen 12
Split Ratio 1:3
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Ham's F10 with 2mM L-glutamine or equivalent
Serum 10% fetal bovine serum Not inactivated
Substrate None specified
Subcultivation Method trypsin-EDTA
Supplement -
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$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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