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GM05289 Fibroblast

Description:

BLOOM SYNDROME; BLM
RECQ PROTEIN-LIKE 3; RECQL3

Affected:

Yes

Sex:

Female

Age:

5 YR (At Sampling)

  • Overview
  • Characterizations
  • Phenotypic Data
  • Publications
  • External Links
  • Culture Protocols

Overview

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Repository NIGMS Human Genetic Cell Repository
Subcollection Heritable Diseases
Hereditary Cancers
Chromosome Abnormalities
Class Repair Defective and Chromosomal Instability Syndromes
Class Syndromes with Increased Chromosome Breakage
Alternate IDs GM17054 [BLOOM SYNDROME; BLM]
Cell Type Fibroblast
Transformant Untransformed
Race Asian
Ethnicity JAPANESE
Family Member 1
Relation to Proband proband
Confirmation Clinical summary/Case history
Species Homo sapiens
Common Name Human
Remarks Clinically affected; B.S. Registry #86; birth weight = 1,920 grams; birth length = 43.5 cm; at age 11 months: weight = 5,290 grams, height = 63.5 cm; small face with hypoplastic malar bone; prominent ears; retruded mandible; high-pitched, squeaky voice; multiple cafe-au-lait spots; depigmented flecks; short stature; facial telangiectasias; photosensitivity; IgA and IgM deficiency; normal serum levels of IgG; increased sister chromatid exchange; chromosome gaps and breaks; donor subject is homozygous for a 1-bp insertion at nucleotide 1544 [1544insA] of the RECQL3 gene resulting in a frameshift and premature termination [fs:514+1-X].

Characterizations

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Passage Frozen 15
 
IDENTIFICATION OF SPECIES OF ORIGIN Species of Origin Confirmed by Nucleoside Phosphorylase, Glucose-6-Phosphate Dehydrogenase, and Lactate Dehydrogenase Isoenzyme Electrophoresis and by Chromosome Analysis
 
DNA LIGASE I AND II Lehmann et al (Cancer Res 48:6343-6347,1988) reported that size fractionated cell-free extracts of this culture showed an abnormal activity profile for DNA ligase I activity. Two distinct peaks at Mr 200,000 and 400,000 were observed. The 400,000 molecular weight peak was believed to be dimeric material which had never before been observed in extracts prepared from numerous normal cell cultures. DNA ligase II showed a normal activity profile. These authors also reported that they observed normal joining of Okazaki fragments during DNA replication and that this cell culture was more sensitive to cell killing by Dimethyl sulfate than normal cells.
 
Gene RECQL3
Chromosomal Location 15q26.1
Allelic Variant 1 fs:514+1-X; BLOOM SYNDROME
Identified Mutation 1544insA
 
Gene RECQL3
Chromosomal Location 15q26.1
Allelic Variant 2 fs:514+1-X; BLOOM SYNDROME
Identified Mutation 1544insA

Phenotypic Data

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Remarks Clinically affected; B.S. Registry #86; birth weight = 1,920 grams; birth length = 43.5 cm; at age 11 months: weight = 5,290 grams, height = 63.5 cm; small face with hypoplastic malar bone; prominent ears; retruded mandible; high-pitched, squeaky voice; multiple cafe-au-lait spots; depigmented flecks; short stature; facial telangiectasias; photosensitivity; IgA and IgM deficiency; normal serum levels of IgG; increased sister chromatid exchange; chromosome gaps and breaks; donor subject is homozygous for a 1-bp insertion at nucleotide 1544 [1544insA] of the RECQL3 gene resulting in a frameshift and premature termination [fs:514+1-X].

Publications

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Trikka D, Fang Z, Renwick A, Jones SH, Chakraborty R, Kimmel M, Nelson DL, Complex SNP-based haplotypes in three human helicases: implications for cancer association studies. Genome Res12(4):627-39 2002
PubMed ID: 11932247
 
Lu X, Lane DP, Differential induction of transcriptionally active p53 following UV or ionizing radiation: defects in chromosome instability syndromes? Cell75:765-78 1993
PubMed ID: 8242748
 
Meyer-Siegler K, Rahman-Mansur N, Wurzer JC, Sirover MA, Proliferative dependent regulation of the glyceraldehyde-3-phosphate dehydrogenase/uracil DNA glycosylase gene in human cells. Carcinogenesis13:2127-32 1992
PubMed ID: 1423884
 
Lehmann AR, Willis AE, Broughton BC, James MR, Steingrimsdottir H, Harcourt SA, Arlett CF, Lindahl T, Relation between the human fibroblast strain 46BR and cell lines representative of Bloom's syndrome. Cancer Res48:6343-7 1988
PubMed ID: 3180052
 
Willis AE, Lindahl T, DNA ligase I deficiency in Bloom's syndrome. Nature325:355-7 1987
PubMed ID: 3808031
 
Kawashima H, Sato T, Taniguchi N, Yagi T, Ishizaki K, Takebe H, Bloom's syndrome in a Japanese girl. Clin Genet17:143-8 1980
PubMed ID: 7363500

External Links

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dbSNP dbSNP ID: 10805
Gene Cards BLM
RECQL3
Gene Ontology GO:0003677 DNA binding
GO:0004003 ATP-dependent DNA helicase activity
GO:0005524 ATP binding
GO:0005634 nucleus
GO:0006260 DNA replication
GO:0006281 DNA repair
GO:0006310 DNA recombination
GO:0016787 hydrolase activity
GO:0019735 antimicrobial humoral response (sensu Vertebrata)
GEO GEO Accession No: GSM1316984
GEO Accession No: GSM1317023
NCBI Gene Gene ID:641
NCBI GTR 210900 BLOOM SYNDROME; BLM
604610 RECQ PROTEIN-LIKE 3; RECQL3
OMIM 210900 BLOOM SYNDROME; BLM
604610 RECQ PROTEIN-LIKE 3; RECQL3
Omim Description BLOOM SYNDROME; BLM
  BS; BLS

Culture Protocols

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Passage Frozen 15
Split Ratio 1:2
Temperature 37 C
Percent CO2 5%
Percent O2 AMBIENT
Medium Eagle's Minimum Essential Medium with Earle's salts and non-essential amino acids with 2mM L-glutamine or equivalent
Serum 15% fetal bovine serum Not inactivated
Substrate None specified
Supplement -
Pricing
International/Commercial/For-profit:
$373.00USD
U.S. Academic/Non-profit/Government:
$216.00USD
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