GM11200
LCL from B-Lymphocyte
Description:
QUECHUA - SOUTH CENTRAL ANDES OF PERU
AMERINDIAN POPULATION
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Repository
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NIGMS Human Genetic Cell Repository
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| Subcollection |
Human Variation |
| Alternate IDs |
GM17309 [QUECHUA - SOUTH CENTRAL ANDES OF PERU] |
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Biopsy Source
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Peripheral vein
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Cell Type
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B-Lymphocyte
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Tissue Type
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Blood
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Transformant
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Epstein-Barr Virus
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Ethnicity
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QUECHUA
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Relation to Proband
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proband
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Confirmation
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Diagnosis confirmation is not possible
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Species
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Homo sapiens
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Common Name
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Human
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Remarks
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| IDENTIFICATION OF SPECIES OF ORIGIN |
Species of Origin Confirmed by Nucleoside Phosphorylase, Glucose-6-Phosphate Dehydrogenase, and Lactate Dehydrogenase Isoenzyme Electrophoresis |
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| GENE MAPPING & DOSAGE STUDIES - Y CHROMOSOME |
PCR analysis of DNA from this cell culture gave a negative result with a primer for Yq11, DYS227. |
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| Remarks |
Line JK2646; Quechua indian from South Central Andes of Peru; collected in Lima; Quechua speaking; probably somewhat admixed with Spanish; adult; YaleStanford Collection |
| Xavier C, de la Puente M, Mosquera-Miguel A, Freire-Aradas A, Kalamara V, Ralf A, Revoir A, Gross TE, Schneider PM, Ames C, Hohoff C, Phillips C, Kayser M, Parson W, VISAGE Consortium W, Development and inter-laboratory evaluation of the VISAGE Enhanced Tool for Appearance and Ancestry inference from DNA Forensic science international Genetics61:102779 2022 |
| PubMed ID: 36182793 |
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| de la Puente M, Ruiz-Ramírez J, Ambroa-Conde A, Xavier C, Pardo-Seco J, Álvarez-Dios J, Freire-Aradas A, Mosquera-Miguel A, Gross TE, Cheung EYY, Branicki W, Nothnagel M, Parson W, Schneider PM, Kayser M, Carracedo Á, Lareu MV, Phillips C, On Behalf Of The Visage Consortium C, Development and Evaluation of the Ancestry Informative Marker Panel of the VISAGE Basic Tool Genes12:102779 2021 |
| PubMed ID: 34440458 |
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| Xavier C, de la Puente M, Sidstedt M, Junker K, Minawi A, Unterländer M, Chantrel Y, Laurent FX, Delest A, Hohoff C, Bastisch I, Hedman J, van der Gaag KJ, Sijen T, Parson W, Evaluation of the VISAGE basic tool for appearance and ancestry inference using ForenSeq® chemistry on the MiSeq FGx® system Forensic science international Genetics58:102675 2021 |
| PubMed ID: 35144074 |
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| Palencia-Madrid L, Xavier C, de la Puente M, Hohoff C, Phillips C, Kayser M, Parson W, Evaluation of the VISAGE Basic Tool for Appearance and Ancestry Prediction Using PowerSeq Chemistry on the MiSeq FGx System Genes11:102675 2020 |
| PubMed ID: 32604780 |
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| de la Puente M, Phillips C, Xavier C, Amigo J, Carracedo A, Parson W, Lareu MV, Building a custom large-scale panel of novel microhaplotypes for forensic identification using MiSeq and Ion S5 massively parallel sequencing systems Forensic science international Genetics45:102213 2019 |
| PubMed ID: 31835179 |
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| Petrovick MS, Boettcher T, Fremont-Smith P, Peragallo C, Ricke DO, Watkins J, Schwoebel E, Analysis of complex DNA mixtures using massively parallel sequencing of SNPs with low minor allele frequencies Forensic science international Genetics46:102234 2019 |
| PubMed ID: 32018060 |
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| Phillips C, McNevin D, Kidd KK, Lagacé R, Wootton S, de la Puente M, Freire-Aradas A, Mosquera-Miguel A, Eduardoff M, Gross T, Dagostino L, Power D, Olson S, Hashiyada M, Oz C, Parson W, Schneider PM, Lareu MV, Daniel R, MAPlex - A massively parallel sequencing ancestry analysis multiplex for Asia-Pacific populations Forensic science international Genetics42:213-226 2019 |
| PubMed ID: 31377479 |
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| Londin ER, Keller MA, Maista C, Smith G, Mamounas LA, Zhang R, Madore SJ, Gwinn K, Corriveau RA.
, CoAIMs: A Cost-Effective Panel of Ancestry Informative Markers for Determining Continental Origins.
Plos One5(10):e13443 2010 |
| PubMed ID: 20976178 |
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| Marini NJ, Gin J, Ziegle J, Keho KH, Ginzinger D, Gilbert DA, Rine J, The prevalence of folate-remedial MTHFR enzyme variants in humans Proceedings of the National Academy of Sciences of the United States of America5(10):e13443 2008 |
| PubMed ID: 18523009 |
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| Meza MM, Yu L, Rodriguez YY, Guild M, Thompson D, Gandolfi AJ, Klimecki WT, Developmentally restricted genetic determinants of human arsenic metabolism: association between urinary methylated arsenic and CYT19 polymorphisms in children Environmental health perspectives113:775-81 2005 |
| PubMed ID: 15929903 |
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| Stedman HH, Kozyak BW, Nelson A, Thesier DM, Su LT, Low DW, Bridges CR, Shrager JB, Minugh-Purvis N, Mitchell MA, Myosin gene mutation correlates with anatomical changes in the human lineage. Nature428(6981):415-8 2004 |
| PubMed ID: 15042088 |
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| Rupert JL, Kidd KK, Norman LE, Monsalve MV, Hochachka PW, Devine DV, Genetic polymorphisms in the Renin-Angiotensin system in high-altitude and
low-altitude Native American populations. Ann Hum Genet67(Pt 1):17-25 2003 |
| PubMed ID: 12556231 |
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| Yu L, Kalla K, Guthrie E, Vidrine A, Klimecki WT, Genetic variation in genes associated with arsenic metabolism: glutathione S-transferase omega 1-1 and purine nucleoside phosphorylase polymorphisms in European and indigenous Americans Environmental health perspectives111:1421-7 2003 |
| PubMed ID: 12928150 |
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| Santos FR, Pandya A, Tyler-Smith C, Pena SD, Schanfield M, Leonard WR,
Osipova L, Crawford MH, Mitchell RJ, The central Siberian origin for native American Y chromosomes. Am J Hum Genet64(2):619-28 1999 |
| PubMed ID: 9973301 |
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| Santos FR, Gerelsaikhan T, Munkhtuja B, Oyunsuren T, Epplen JT, Pena SD, Geographic differences in the allele frequencies of the human Y-linked tetranucleotide polymorphism DYS19. Hum Genet97(3):309-13 1996 |
| PubMed ID: 8786070 |
| Split Ratio |
1:3 |
| Temperature |
37 C |
| Percent CO2 |
5% |
| Percent O2 |
AMBIENT |
| Medium |
Roswell Park Memorial Institute Medium 1640 with 2mM L-glutamine or equivalent |
| Serum |
15% fetal bovine serum Not Inactivated |
| Substrate |
None specified |
| Subcultivation Method |
dilution - add fresh medium |
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