Coriell Institute



Aliquot Size: 50 µg each

Sex: Males: 53 Females: 37

Brief Description: The HAPMAPPT03 plate, from the Yoruba in Ibadan, Nigeria includes a set of 30 Trios with 90 samples. In addition, there are 5 duplicated samples and 1 buffer control. The concentration of each DNA sample to be plated is normalized and then this concentration is verified. The DNA concentration is 250 ng/µl and there are 50 µg of DNA per well. Once all samples are in place, a DNA fingerprint is determined for each sample to verify the identity on the plate. The specific position on the plates has been optimized by NHGRI to reduce any possible errors in sample identity during the genotyping process. The positions of the 5 duplicated samples and 1 buffer control are indicated by gray shading.

Subsequent to submission and the establishment of cell lines in this panel, a detailed analysis of HapMap data has shown that there are previously unreported family relationships to other members of this panel, as described in Nature 437:1299-1320 (2005). (See Supplementary Table 15 and Supplementary Information on p.12 [PMID: 16255080]).

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PubMed ID: 19208780
Tahara H, Yee SW, Urban TJ, Hesselson S, Castro RA, Kawamoto M, Stryke D, Johns SJ, Ferrin TE, Kwok PY, Giacomini KM, Functional genetic variation in the basal promoter of the organic cation/carnitine transporters OCTN1 (SLC22A4) and OCTN2 (SLC22A5) The Journal of pharmacology and experimental therapeutics329:262-71 2009
PubMed ID: 19141711
Gajdos ZK, Butler JL, Henderson KD, He C, Supelak PJ, Egyud M, Price A, Reich D, Clayton PE, Le Marchand L, Hunter DJ, Henderson BE, Palmert MR, Hirschhorn JN, Association studies of common variants in 10 hypogonadotropic hypogonadism genes with age at menarche The Journal of clinical endocrinology and metabolism93:4290-8 2008
PubMed ID: 18728166
Moore AF, Jablonski KA, McAteer JB, Saxena R, Pollin TI, Franks PW, Hanson RL, Shuldiner AR, Knowler WC, Altshuler D, Florez JC, Diabetes Prevention Program Research Group JC, Extension of type 2 diabetes genome-wide association scan results in the diabetes prevention program Diabetes57:2503-10 2008
PubMed ID: 18544707
Harari A, Ooms M, Mulder LC, Simon V, Polymorphisms and splice variants influence the antiretroviral activity of human APOBEC3H Journal of virology83:295-303 2008
PubMed ID: 18945781
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Bostrom MA, Freedman BI, Langefeld CD, Liu L, Hicks PJ, Bowden DW, Association of adiponectin gene polymorphisms with type 2 diabetes in an African American population enriched for nephropathy Diabetes58:499-504 2008
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PubMed ID: 19095759
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Hodgkinson CA, Yuan Q, Xu K, Shen PH, Heinz E, Lobos EA, Binder EB, Cubells J, Ehlers CL, Gelernter J, Mann J, Riley B, Roy A, Tabakoff B, Todd RD, Zhou Z, Goldman D, Addictions biology: haplotype-based analysis for 130 candidate genes on a single array Alcohol and alcoholism (Oxford, Oxfordshire)43:505-15 2008
PubMed ID: 18477577
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Hartford CM, Duan S, Delaney SM, Mi S, Kistner EO, Lamba JK, Huang RS, Dolan ME, Population-specific genetic variants important in susceptibility to cytarabine arabinoside cytotoxicity Blood113:2145-53 2008
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Liu CY, Hsu YH, Pan PC, Wu MT, Ho CK, Su L, Xu X, Li Y, Christiani DC, Kaohsiung Leukemia Research Group DC, Maternal and offspring genetic variants of AKR1C3 and the risk of childhood leukemia Carcinogenesis29:984-90 2008
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Yamazaki K, Takahashi A, Takazoe M, Kubo M, Onouchi Y, Fujino A, Kamatani N, Nakamura Y, Hata A, Positive association of genetic variants in the upstream region of NKX2-3 with Crohn's disease in Japanese patients Gut58:228-32 2008
PubMed ID: 18936107
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Qiu XS, Tang NL, Yeung HY, Qiu Y, Cheng JC, Association study between adolescent idiopathic scoliosis and the DPP9 gene which is located in the candidate region identified by linkage analysis Postgraduate medical journal84:498-501 2008
PubMed ID: 18940951
Orho-Melander M, Melander O, Guiducci C, Perez-Martinez P, Corella D, Roos C, Tewhey R, Rieder MJ, Hall J, Abecasis G, Tai ES, Welch C, Arnett DK, Lyssenko V, Lindholm E, Saxena R, de Bakker PI, Burtt N, Voight BF, Hirschhorn JN, Tucker KL, Hedner T, Tuomi T, Isomaa B, Eriksson KF, Taskinen MR, Wahlstrand B, Hughes TE, Parnell LD, Lai CQ, Berglund G, Peltonen L, Vartiainen E, Jousilahti P, Havulinna AS, Salomaa V, Nilsson P, Groop L, Altshuler D, Ordovas JM, Kathiresan S, Common missense variant in the glucokinase regulatory protein gene is associated with increased plasma triglyceride and C-reactive protein but lower fasting glucose concentrations Diabetes57:3112-21 2008
PubMed ID: 18678614
Keene KL, Mychaleckyj JC, Smith SG, Leak TS, Perlegas PS, Langefeld CD, Freedman BI, Rich SS, Bowden DW, Sale MM, Association of the distal region of the ectonucleotide pyrophosphatase/phosphodiesterase 1 gene with type 2 diabetes in an African-American population enriched for nephropathy Diabetes57:1057-62 2008
PubMed ID: 18184924
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PubMed ID: 18443202
Marioni JC, White M, Tavaré S, Lynch AG, Hidden copy number variation in the HapMap population Proceedings of the National Academy of Sciences of the United States of America105:10067-72 2008
PubMed ID: 18632583
Huang RS, Duan S, Kistner EO, Hartford CM, Dolan ME, Genetic variants associated with carboplatin-induced cytotoxicity in cell lines derived from Africans Molecular cancer therapeutics7:3038-46 2008
PubMed ID: 18765826
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PubMed ID: 18948376
Kidd JM, Cheng Z, Graves T, Fulton B, Wilson RK, Eichler EE, Haplotype sorting using human fosmid clone end-sequence pairs Genome research18:2016-23 2008
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PubMed ID: 17921507
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Takeuchi F, Serizawa M, Kato N, HapMap coverage for SNPs in the Japanese population J Hum Genet53(1):96-9 2008
PubMed ID: 18043864
Fry AE, Griffiths MJ, Auburn S, Diakite M, Forton JT, Green A, Richardson A, Wilson J, Jallow M, Sisay-Joof F, Pinder M, Peshu N, Williams TN, Marsh K, Molyneux ME, Taylor TE, Rockett KA, Kwiatkowski DP, Common variation in the ABO glycosyltransferase is associated with susceptibility to severe Plasmodium falciparum malaria Hum Mol Genet17(4):567-76 2008
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PubMed ID: 17967832
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O'Dushlaine CT, Dolan C, Weale ME, Stanton A, Croke DT, Kalviainen R, Eriksson K, Kantanen AM, Gibson RA, Hosford D, Sisodiya SM, Gill M, Corvin AP, Morris DW, Delanty N, Cavalleri GL, An assessment of the Irish population for large-scale genetic mapping studies involving epilepsy and other complex diseases Eur J Hum Genet16(2):176-83 2008
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Stoyanovich J, Pe'er I, MutaGeneSys: Estimating Individual Disease Susceptibility Based on Genome-Wide SNP Array Data Bioinformatics24(3):440-2 2008
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Broadbent HM, Peden JF, Lorkowski S, Goel A, Ongen H, Green F, Clarke R, Collins R, Franzosi MG, Tognoni G, Seedorf U, Rust S, Eriksson P, Hamsten A, Farrall M, Watkins H, for the PROCARDIS consortium H, Susceptibility to coronary artery disease and diabetes is encoded by distinct, tightly linked, SNPs in the ANRIL locus on chromosome 9p Hum Mol Genet17(6):806-14 2008
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Manolio TA, Brooks LD, Collins FS, A HapMap harvest of insights into the genetics of common disease The Journal of clinical investigation118:1590-605 2008
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Zhao Y, Marotta M, Eichler EE, Eng C, Tanaka H, Linkage disequilibrium between two high-frequency deletion polymorphisms: implications for association studies involving the glutathione-S transferase (GST) genes PLoS genetics5:e1000472 2008
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Gu S, Pakstis AJ, Li H, Speed WC, Kidd JR, Kidd KK, Significant variation in haplotype block structure but conservation in tagSNP patterns among global populations European journal of human genetics : EJHG15:302-12 2007
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Huang RS, Kistner EO, Bleibel WK, Shukla SJ, Dolan ME, Effect of population and gender on chemotherapeutic agent-induced cytotoxicity Molecular cancer therapeutics6:31-6 2007
PubMed ID: 17237264
Barnes KC, Grant AV, Hansel NN, Gao P, Dunston GM, African Americans with asthma: genetic insights Proceedings of the American Thoracic Society4:58-68 2007
PubMed ID: 17202293
Zhang W, Duan S, Kistner EO, Bleibel WK, Huang RS, Clark TA, Chen TX, Schweitzer AC, Blume JE, Cox NJ, Dolan ME, Evaluation of genetic variation contributing to differences in gene expression between populations American journal of human genetics82:631-40 2007
PubMed ID: 18313023
Bossé Y, Hudson TJ, Toward a Comprehensive Set of Asthma Susceptibility Genes Annu Rev Med58:43-56 2007
PubMed ID: 16907639
Hua J, Craig DW, Brun M, Webster J, Zismann V, Tembe W, Joshipura K, Huentelman MJ, Dougherty ER, Stephan DA, SNiPer-HD: improved genotype calling accuracy by an expectation-maximization algorithm for high-density SNP arrays Bioinformatics23(1):57-63 2007
PubMed ID: 17062589
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Steemers FJ, Gunderson KL, Whole genome genotyping technologies on the BeadArray platform Biotechnology journal2:41-9 2007
PubMed ID: 17225249
Szeszko S, Healy B, Stevens H, Balabanova Y, Drobniewski F, Todd A, Nejentsev S, Resequencing and association analysis of the SP110 gene in adult pulmonary tuberculosis Hum Genet121(2):155-160 2007
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Thomson R, Quinn S, McKay J, Silver J, Bahlo M, Fitzgerald L, Foote S, Dickinson J, Stankovich J, The advantages of dense marker sets for linkage analysis with very large families Hum Genet121(3-4):459-68 2007
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Wang ET, Moyzis RK, Genetic evidence for ongoing balanced selection at human DNA repair genes ERCC8, FANCC, and RAD51C Mutation research616:165-74 2007
PubMed ID: 17257630
Cheng I, Plummer SJ, Casey G, Witte JS, Toll-like receptor 4 genetic variation and advanced prostate cancer risk Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology16:352-5 2007
PubMed ID: 17301271
Clarimon J, Gray RR, Williams LN, Enoch MA, Robin RW, Albaugh B, Singleton A, Goldman D, Mulligan CJ, Linkage disequilibrium and association analysis of alpha-synuclein and alcohol and drug dependence in two American Indian populations Alcoholism, clinical and experimental research31:546-54 2007
PubMed ID: 17374033
Ding SL, Yu JC, Chen ST, Hsu GC, Shen CY, Genetic variation in the premature aging gene WRN: a case-control study on breast cancer susceptibility Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology16:263-9 2007
PubMed ID: 17301258
Dobrin S, Comparison of HapMap data on Affymetrix and Illumina platforms: expanding the power of studies and a not so unexpected synergy Pharmacogenomics8:199-201 2007
PubMed ID: 17286542
Ennis S, Goverdhan S, Cree AJ, Hoh J, Collins A, Lotery AJ, Fine scale Linkage Disequilibrium mapping of Age Related Macular Degeneration in the Complement Factor H gene region Br J Ophthalmol91(7):966-70 2007
PubMed ID: 17314151
Frayling TM, Timpson NJ, Weedon MN, Zeggini E, Freathy RM, Lindgren CM, Perry JR, Elliott KS, Lango H, Rayner NW, Shields B, Harries LW, Barrett JC, Ellard S, Groves CJ, Knight B, Patch AM, Ness AR, Ebrahim S, Lawlor DA, Ring SM, Ben-Shlomo Y, Jarvelin MR, Sovio U, Bennett AJ, Melzer D, Ferrucci L, Loos RJ, Barroso I, Wareham NJ, Karpe F, Owen KR, Cardon LR, Walker M, Hitman GA, Palmer CN, Doney AS, Morris AD, Smith GD, Hattersley AT, McCarthy MI, A common variant in the FTO gene is associated with body mass index and predisposes to childhood and adult obesity Science (New York, NY)316:889-94 2007
PubMed ID: 17434869
Garcia-Barceló MM, Miao X, Lui VC, So MT, Ngan ES, Leon TY, Lau DK, Liu TT, Lao X, Guo W, Holden WT, Moore J, Tam PK, Correlation Between Genetic Variations in Hox Clusters and Hirschsprung's Disease Ann Hum Genet71(Pt 4):526-36 2007
PubMed ID: 17274802
Zhao LP, Li SS, Shen F, A haplotype-linkage analysis method for estimating recombination rates using dense SNP trio data Genetic epidemiology31:154-72 2007
PubMed ID: 17219374
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PubMed ID: 17360451
Graham RR, Kyogoku C, Sigurdsson S, Vlasova IA, Davies LR, Baechler EC, Plenge RM, Koeuth T, Ortmann WA, Hom G, Bauer JW, Gillett C, Burtt N, Cunninghame Graham DS, Onofrio R, Petri M, Gunnarsson I, Svenungsson E, Rönnblom L, Nordmark G, Gregersen PK, Moser K, Gaffney PM, Criswell LA, Vyse TJ, Syvänen AC, Bohjanen PR, Daly MJ, Behrens TW, Altshuler D, Three functional variants of IFN regulatory factor 5 (IRF5) define risk and protective haplotypes for human lupus Proceedings of the National Academy of Sciences of the United States of America104:6758-63 2007
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Hewitt AW, Samples JR, Allingham RR, Järvelä I, Kitsos G, Krishnadas SR, Richards JE, Lichter PR, Petersen MB, Sundaresan P, Wiggs JL, Mackey DA, Wirtz MK, Investigation of founder effects for the Thr377Met Myocilin mutation in glaucoma families from differing ethnic backgrounds Molecular vision13:487-92 2007
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Iyengar SK, Adler SG, The application of the HapMap to diabetic nephropathy and other causes of chronic renal failure Seminars in nephrology27:223-36 2007
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Haiman CA, Dossus L, Setiawan VW, Stram DO, Dunning AM, Thomas G, Thun MJ, Albanes D, Altshuler D, Ardanaz E, Boeing H, Buring J, Burtt N, Calle EE, Chanock S, Clavel-Chapelon F, Colditz GA, Cox DG, Feigelson HS, Hankinson SE, Hayes RB, Henderson BE, Hirschhorn JN, Hoover R, Hunter DJ, Kaaks R, Kolonel LN, Le Marchand L, Lenner P, Lund E, Panico S, Peeters PH, Pike MC, Riboli E, Tjonneland A, Travis R, Trichopoulos D, Wacholder S, Ziegler RG, Genetic variation at the CYP19A1 locus predicts circulating estrogen levels but not breast cancer risk in postmenopausal women Cancer research67:1893-7 2007
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Jones TS, Yang W, Evans WE, Relling MV, Using HapMap tools in pharmacogenomic discovery: the thiopurine methyltransferase polymorphism Clinical pharmacology and therapeutics81:729-34 2007
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Ma Q, Wyszynski DF, Farrell JJ, Kutlar A, Farrer LA, Baldwin CT, Steinberg MH, Fetal hemoglobin in sickle cell anemia: genetic determinants of response to hydroxyurea Pharmacogenomics J7(6):386-94 2007
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Maniatis N, Collins A, Morton NE, Effects of single SNPs, haplotypes, and whole-genome LD maps on accuracy of association mapping Genetic epidemiology31:179-88 2007
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Meex SJ, van Greevenbroek MM, Ayoubi TA, Vlietinck R, van Vliet-Ostaptchouk JV, Hofker MH, Vermeulen VM, Schalkwijk CG, Feskens EJ, Boer JM, Stehouwer CD, van der Kallen CJ, de Bruin TW, ATF6 polymorphisms and haplotypes are associated with impaired glucose homeostasis and type 2 diabetes in Dutch Caucasians J Clin Endocrinol Metab31:179-88 2007
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Rollinson S, Snowden JS, Neary D, Morrison KE, Mann DM, Pickering-Brown SM, TDP-43 gene analysis in frontotemporal lobar degeneration Neuroscience letters419:1-4 2007
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Schymick JC, Scholz SW, Fung HC, Britton A, Arepalli S, Gibbs JR, Lombardo F, Matarin M, Kasperaviciute D, Hernandez DG, Crews C, Bruijn L, Rothstein J, Mora G, Restagno G, Chiò A, Singleton A, Hardy J, Traynor BJ, Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data Lancet neurology6:322-8 2007
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Service S, International Collaborative Group on Isolated Populations S, Sabatti C, Freimer N, Tag SNPs chosen from HapMap perform well in several population isolates Genetic epidemiology31:189-94 2007
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Sinilnikova OM, McKay JD, Tavtigian SV, Canzian F, DeSilva D, Biessy C, Monnier S, Dossus L, Boillot C, Gioia L, Hughes DJ, Jensen MK, Overvad K, Tjonneland A, Olsen A, Clavel-Chapelon F, Chajès V, Joulin V, Linseisen J, Chang-Claude J, Boeing H, Dahm S, Trichopoulou A, Trichopoulos D, Koliva M, Khaw KT, Bingham S, Allen NE, Key T, Palli D, Panico S, Berrino F, Tumino R, Vineis P, Bueno-de-Mesquita HB, Peeters PH, van Gils CH, Lund E, Pera G, Quirós JR, Dorronsoro M, Martínez García C, Tormo MJ, Ardanaz E, Hallmans G, Lenner P, Berglund G, Manjer J, Riboli E, Lenoir GM, Kaaks R, Haplotype-based analysis of common variation in the acetyl-coA carboxylase alpha gene and breast cancer risk: a case-control study nested within the European Prospective Investigation into Cancer and Nutrition Cancer epidemiology, biomarkers & prevention : a publication of the American Association for Cancer Research, cosponsored by the American Society of Preventive Oncology16:409-15 2007
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Kuningas M, Mägi R, Westendorp RG, Slagboom PE, Remm M, van Heemst D, Haplotypes in the human Foxo1a and Foxo3a genes; impact on disease and mortality at old age European journal of human genetics : EJHG15:294-301 2007
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Smemo S, Borevitz JO, Redundancy in genotyping arrays PLoS ONE2:e287 2007
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Soranzo N, Kelly L, Martinian L, Burley MW, Thom M, Sali A, Kroetz DL, Goldstein DB, Sisodiya SM, Lack of support for a role for RLIP76 (RALBP1) in response to treatment or predisposition to epilepsy Epilepsia48:674-83 2007
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Stark M, Hayward N, Genome-wide loss of heterozygosity and copy number analysis in melanoma using high-density single-nucleotide polymorphism arrays Cancer research67:2632-42 2007
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Stone JL, Merriman B, Cantor RM, Geschwind DH, Nelson SF, High density SNP association study of a major autism linkage region on chromosome 17 Human molecular genetics16:704-15 2007
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Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, Thorne N, Redon R, Bird CP, de Grassi A, Lee C, Tyler-Smith C, Carter N, Scherer SW, Tavaré S, Deloukas P, Hurles ME, Dermitzakis ET, Relative impact of nucleotide and copy number variation on gene expression phenotypes Science (New York, NY)315:848-53 2007
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Broderick P, Carvajal-Carmona L, Pittman AM, Webb E, Howarth K, Rowan A, Lubbe S, Spain S, Sullivan K, Fielding S, Jaeger E, Vijayakrishnan J, Kemp Z, Gorman M, Chandler I, Papaemmanuil E, Penegar S, Wood W, Sellick G, Qureshi M, Teixeira A, Domingo E, Barclay E, Martin L, Sieber O, CORGI Consortium O, Kerr D, Gray R, Peto J, Cazier JB, Tomlinson I, Houlston RS, A genome-wide association study shows that common alleles of SMAD7 influence colorectal cancer risk Nature genetics39:1315-7 2007
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Christoforou A, Le Hellard S, Thomson PA, Morris SW, Tenesa A, Pickard BS, Wray NR, Muir WJ, Blackwood DH, Porteous DJ, Evans KL, Association analysis of the chromosome 4p15-p16 candidate region for bipolar disorder and schizophrenia Molecular psychiatry12:1011-25 2007
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Cooper D, Smyth J, Bailey R, Payne F, Downes K, Godfrey M, Masters J, Zeitels R, Vella A, Walker M, Todd A, The candidate genes TAF5L, TCF7, PDCD1, IL6 and ICAM1 cannot be excluded from having effects in type 1 diabetes BMC Med Genet8(1):71 2007
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Gudbjartsson DF, Arnar DO, Helgadottir A, Gretarsdottir S, Holm H, Sigurdsson A, Jonasdottir A, Baker A, Thorleifsson G, Kristjansson K, Palsson A, Blondal T, Sulem P, Backman VM, Hardarson GA, Palsdottir E, Helgason A, Sigurjonsdottir R, Sverrisson JT, Kostulas K, Ng MC, Baum L, So WY, Wong KS, Chan JC, Furie KL, Greenberg SM, Sale M, Kelly P, MacRae CA, Smith EE, Rosand J, Hillert J, Ma RC, Ellinor PT, Thorgeirsson G, Gulcher JR, Kong A, Thorsteinsdottir U, Stefansson K, Variants conferring risk of atrial fibrillation on chromosome 4q25 Nature448:353-7 2007
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Gudmundsson J, Sulem P, Steinthorsdottir V, Bergthorsson JT, Thorleifsson G, Manolescu A, Rafnar T, Gudbjartsson D, Agnarsson BA, Baker A, Sigurdsson A, Benediktsdottir KR, Jakobsdottir M, Blondal T, Stacey SN, Helgason A, Gunnarsdottir S, Olafsdottir A, Kristinsson KT, Birgisdottir B, Ghosh S, Thorlacius S, Magnusdottir D, Stefansdottir G, Kristjansson K, Bagger Y, Wilensky RL, Reilly MP, Morris AD, Kimber CH, Adeyemo A, Chen Y, Zhou J, So WY, Tong PC, Ng MC, Hansen T, Andersen G, Borch-Johnsen K, Jorgensen T, Tres A, Fuertes F, Ruiz-Echarri M, Asin L, Saez B, van Boven E, Klaver S, Swinkels DW, Aben KK, Graif T, Cashy J, Suarez BK, van Vierssen Trip O, Frigge ML, Ober C, Hofker MH, Wijmenga C, Christiansen C, Rader DJ, Palmer CN, Rotimi C, Chan JC, Pedersen O, Sigurdsson G, Benediktsson R, Jonsson E, Einarsson GV, Mayordomo JI, Catalona WJ, Kiemeney LA, Barkardottir RB, Gulcher JR, Thorsteinsdottir U, Kong A, Stefansson K, Two variants on chromosome 17 confer prostate cancer risk, and the one in TCF2 protects against type 2 diabetes Nature genetics39:977-83 2007
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Hakonarson H, Grant SF, Bradfield JP, Marchand L, Kim CE, Glessner JT, Grabs R, Casalunovo T, Taback SP, Frackelton EC, Lawson ML, Robinson LJ, Skraban R, Lu Y, Chiavacci RM, Stanley CA, Kirsch SE, Rappaport EF, Orange JS, Monos DS, Devoto M, Qu HQ, Polychronakos C, A genome-wide association study identifies KIAA0350 as a type 1 diabetes gene Nature448:591-4 2007
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Hamvas A, Wegner DJ, Carlson CS, Bergmann KR, Trusgnich MA, Fulton L, Kasai Y, An P, Mardis ER, Wilson RK, Cole FS, Comprehensive genetic variant discovery in the surfactant protein B gene Pediatric research62:170-5 2007
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Helgadottir A, Thorleifsson G, Manolescu A, Gretarsdottir S, Blondal T, Jonasdottir A, Jonasdottir A, Sigurdsson A, Baker A, Palsson A, Masson G, Gudbjartsson DF, Magnusson KP, Andersen K, Levey AI, Backman VM, Matthiasdottir S, Jonsdottir T, Palsson S, Einarsdottir H, Gunnarsdottir S, Gylfason A, Vaccarino V, Hooper WC, Reilly MP, Granger CB, Austin H, Rader DJ, Shah SH, Quyyumi AA, Gulcher JR, Thorgeirsson G, Thorsteinsdottir U, Kong A, Stefansson K, A common variant on chromosome 9p21 affects the risk of myocardial infarction Science316:1491-3 2007
PubMed ID: 17478679
Huang BE, Amos CI, Lin DY, Detecting haplotype effects in genomewide association studies Genet Epidemiol31(8):803-812 2007
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Eberle MA, Ng PC, Kuhn K, Zhou L, Peiffer DA, Galver L, Viaud-Martinez KA, Lawley CT, Gunderson KL, Shen R, Murray SS, Power to detect risk alleles using genome-wide tag SNP panels PLoS genetics3:1827-37 2007
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Enomoto H, Noguchi E, Iijima S, Takahashi T, Hayakawa K, Ito M, Kano T, Aoki T, Suzuki Y, Koga M, Tamari M, Shiohara T, Otsuka F, Arinami T, Single nucleotide polymorphism-based genome-wide linkage analysis in Japanese atopic dermatitis families BMC dermatology7:5 2007
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Estivill X, Armengol L, Copy number variants and common disorders: filling the gaps and exploring complexity in genome-wide association studies PLoS genetics3:1787-99 2007
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Florez JC, Manning AK, Dupuis J, McAteer J, Irenze K, Gianniny L, Mirel DB, Fox CS, Cupples LA, Meigs JB, A 100K genome-wide association scan for diabetes and related traits in the Framingham Heart Study: replication and integration with other genome-wide datasets Diabetes56:3063-74 2007
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Rousseau K, Byrne C, Griesinger G, Leung A, Chung A, Hill AS, Swallow DM, Allelic Association and Recombination Hotspots in the Mucin Gene (MUC) Complex on Chromosome 11p155 Ann Hum Genet71:561-569 2007
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Scott LJ, Mohlke KL, Bonnycastle LL, Willer CJ, Li Y, Duren WL, Erdos MR, Stringham HM, Chines PS, Jackson AU, Prokunina-Olsson L, Ding CJ, Swift AJ, Narisu N, Hu T, Pruim R, Xiao R, Li XY, Conneely KN, Riebow NL, Sprau AG, Tong M, White PP, Hetrick KN, Barnhart MW, Bark CW, Goldstein JL, Watkins L, Xiang F, Saramies J, Buchanan TA, Watanabe RM, Valle TT, Kinnunen L, Abecasis GR, Pugh EW, Doheny KF, Bergman RN, Tuomilehto J, Collins FS, Boehnke M, A genome-wide association study of type 2 diabetes in Finns detects multiple susceptibility variants Science316:1341-5 2007
PubMed ID: 17463248
Scuteri A, Sanna S, Chen WM, Uda M, Albai G, Strait J, Najjar S, Nagaraja R, Orrú M, Usala G, Dei M, Lai S, Maschio A, Busonero F, Mulas A, Ehret GB, Fink AA, Weder AB, Cooper RS, Galan P, Chakravarti A, Schlessinger D, Cao A, Lakatta E, Abecasis GR, Genome-Wide Association Scan Shows Genetic Variants in the FTO Gene Are Associated with Obesity-Related Traits PLoS Genet3:e115 2007
PubMed ID: 17658951
Shi M, Umbach DM, Weinberg CR, Identification of risk-related haplotypes with the use of multiple SNPs from nuclear families American journal of human genetics81:53-66 2007
PubMed ID: 17564963
Stacey SN, Manolescu A, Sulem P, Rafnar T, Gudmundsson J, Gudjonsson SA, Masson G, Jakobsdottir M, Thorlacius S, Helgason A, Aben KK, Strobbe LJ, Albers-Akkers MT, Swinkels DW, Henderson BE, Kolonel LN, Le Marchand L, Millastre E, Andres R, Godino J, Garcia-Prats MD, Polo E, Tres A, Mouy M, Saemundsdottir J, Backman VM, Gudmundsson L, Kristjansson K, Bergthorsson JT, Kostic J, Frigge ML, Geller F, Gudbjartsson D, Sigurdsson H, Jonsdottir T, Hrafnkelsson J, Johannsson J, Sveinsson T, Myrdal G, Grimsson HN, Jonsson T, von Holst S, Werelius B, Margolin S, Lindblom A, Mayordomo JI, Haiman CA, Kiemeney LA, Johannsson OT, Gulcher JR, Thorsteinsdottir U, Kong A, Stefansson K, Common variants on chromosomes 2q35 and 16q12 confer susceptibility to estrogen receptor-positive breast cancer Nature genetics39:865-9 2007
PubMed ID: 17529974
Steinthorsdottir V, Thorleifsson G, Reynisdottir I, Benediktsson R, Jonsdottir T, Walters GB, Styrkarsdottir U, Gretarsdottir S, Emilsson V, Ghosh S, Baker A, Snorradottir S, Bjarnason H, Ng MC, Hansen T, Bagger Y, Wilensky RL, Reilly MP, Adeyemo A, Chen Y, Zhou J, Gudnason V, Chen G, Huang H, Lashley K, Doumatey A, So WY, Ma RC, Andersen G, Borch-Johnsen K, Jorgensen T, van Vliet-Ostaptchouk JV, Hofker MH, Wijmenga C, Christiansen C, Rader DJ, Rotimi C, Gurney M, Chan JC, Pedersen O, Sigurdsson G, Gulcher JR, Thorsteinsdottir U, Kong A, Stefansson K, A variant in CDKAL1 influences insulin response and risk of type 2 diabetes Nature genetics39:770-5 2007
PubMed ID: 17460697
Sun S, Greenwood CM, Neal RM, Haplotype inference using a Bayesian Hidden Markov model Genet Epidemiol31(8):937-948 2007
PubMed ID: 17630649
Todd JA, Walker NM, Cooper JD, Smyth DJ, Downes K, Plagnol V, Bailey R, Nejentsev S, Field SF, Payne F, Lowe CE, Szeszko JS, Hafler JP, Zeitels L, Yang JH, Vella A, Nutland S, Stevens HE, Schuilenburg H, Coleman G, Maisuria M, Meadows W, Smink LJ, Healy B, Burren OS, Lam AA, Ovington NR, Allen J, Adlem E, Leung HT, Wallace C, Howson JM, Guja C, Ionescu-Tîrgoviste C, Genetics of Type 1 Diabetes in Finland C, Simmonds MJ, Heward JM, Gough SC, Wellcome Trust Case Control Consortium SC, Dunger DB, Wicker LS, Clayton DG, Robust associations of four new chromosome regions from genome-wide analyses of type 1 diabetes Nature genetics39:857-64 2007
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Tomlinson I, Webb E, Carvajal-Carmona L, Broderick P, Kemp Z, Spain S, Penegar S, Chandler I, Gorman M, Wood W, Barclay E, Lubbe S, Martin L, Sellick G, Jaeger E, Hubner R, Wild R, Rowan A, Fielding S, Howarth K, the CORGI Consortium K, Silver A, Atkin W, Muir K, Logan R, Kerr D, Johnstone E, Sieber O, Gray R, Thomas H, Peto J, Cazier JB, Houlston R, A genome-wide association scan of tag SNPs identifies a susceptibility variant for colorectal cancer at 8q2421 Nature Genetics39:984-988 2007
PubMed ID: 17618284
van Heel DA, Franke L, Hunt KA, Gwilliam R, Zhernakova A, Inouye M, Wapenaar MC, Barnardo MC, Bethel G, Holmes GK, Feighery C, Jewell D, Kelleher D, Kumar P, Travis S, Walters JR, Sanders DS, Howdle P, Swift J, Playford RJ, McLaren WM, Mearin ML, Mulder CJ, McManus R, McGinnis R, Cardon LR, Deloukas P, Wijmenga C, A genome-wide association study for celiac disease identifies risk variants in the region harboring IL2 and IL21 Nature genetics39:827-9 2007
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Van Limbergen J, Nimmo ER, Russell RK, Drummond HE, Smith L, Anderson NH, Davies G, Arnott ID, Wilson DC, Satsangi J, Investigation of NOD1/CARD4 variation in Inflammatory Bowel Disease using a haplotype-tagging strategy Human Molecular Genetics16(18):2175-86 2007
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Wellcome Trust Case Control Consortium, Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls Nature447:661-78 2007
PubMed ID: 17554300
Xiao Y, Segal MR, Yang YH, Yeh RF, A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays Bioinformatics (Oxford, England)23:1459-67 2007
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Xu Z, Kaplan NL, Taylor JA, Tag SNP selection for candidate gene association studies using HapMap and gene resequencing data European Journal of Human Genetics15(10):1063-70 2007
PubMed ID: 17568388
Yamazaki K, Onouchi Y, Takazoe M, Kubo M, Nakamura Y, Hata A, Association analysis of genetic variants in IL23R, ATG16L1 and 5p131 loci with Crohn's disease in Japanese patients Journal of human genetics52:575-83 2007
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Zanke BW, Greenwood CM, Rangrej J, Kustra R, Tenesa A, Farrington SM, Prendergast J, Olschwang S, Chiang T, Crowdy E, Ferretti V, Laflamme P, Sundararajan S, Roumy S, Olivier JF, Robidoux F, Sladek R, Montpetit A, Campbell P, Bezieau S, O'shea AM, Zogopoulos G, Cotterchio M, Newcomb P, McLaughlin J, Younghusband B, Green R, Green J, Porteous ME, Campbell H, Blanche H, Sahbatou M, Tubacher E, Bonaiti-Pellié C, Buecher B, Riboli E, Kury S, Chanock SJ, Potter J, Thomas G, Gallinger S, Hudson TJ, Dunlop MG, Genome-wide association scan identifies a colorectal cancer susceptibility locus on chromosome 8q24 Nature Genetics39:989-994 2007
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Zhao ZZ, Nyholt DR, Le L, Thomas S, Engwerda C, Randall L, Treloar SA, Montgomery GW, Genetic variation in tumour necrosis factor and lymphotoxin is not associated with endometriosis in an Australian sample Human reproduction (Oxford, England)22:2389-97 2007
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Cole W, Naj C, O'Connell R, Stine C, Sorkin D, Wozniak A, Stern J, Yepes M, Lawrence A, Reinhart J, Strickland K, Mitchell D, Kittner J, Neuroserpin polymorphisms and stroke risk in a biracial population: the stroke prevention in young women study BMC Neurol7(1):37 2007
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Beyens G, Daroszewska A, de Freitas F, Fransen E, Vanhoenacker F, Verbruggen L, Zmierczak HG, Westhovens R, Van Offel J, Ralston SH, Devogelaer JP, Van Hul W, Identification of sex-specific associations between polymorphisms of the osteoprotegerin gene, TNFRSF11B, and Paget's disease of bone Journal of bone and mineral research : the official journal of the American Society for Bone and Mineral Research22:1062-71 2007
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Askew DJ, Cataltepe S, Kumar V, Edwards C, Pace SM, Howarth RN, Pak SC, Askew YS, Brömme D, Luke CJ, Whisstock JC, Silverman GA, SERPINB11 Is a New Noninhibitory Intracellular Serpin: COMMON SINGLE NUCLEOTIDE POLYMORPHISMS IN THE SCAFFOLD IMPAIR CONFORMATIONAL CHANGE The Journal of biological chemistry282:24948-60 2007
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Buch S, Schafmayer C, Völzke H, Becker C, Franke A, von Eller-Eberstein H, Kluck C, Bässmann I, Brosch M, Lammert F, Miquel JF, Nervi F, Wittig M, Rosskopf D, Timm B, Höll C, Seeger M, Elsharawy A, Lu T, Egberts J, Fändrich F, Fölsch UR, Krawczak M, Schreiber S, Nürnberg P, Tepel J, Hampe J, A genome-wide association scan identifies the hepatic cholesterol transporter ABCG8 as a susceptibility factor for human gallstone disease Nature Genetics39:995-999 2007
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Chen H, Green RE, Paabo S, Slatkin M, The Allele-Frequency Spectrum Conditioned on Information from a Closely-Related Species Genetics177(1):387-98 2007
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Cheng C Y, Tang L S, Yeung HY, Miller N, Genetic Association of Complex Traits: Using Idiopathic Scoliosis as an Example Clin Orthop Relat Res462:38-44 2007
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Delaneau O, Coulonges C, Boelle PY, Nelson G, Spadoni JL, Zagury JF, ISHAPE: new rapid and accurate software for haplotyping BMC bioinformatics8:205 2007
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Diabetes Genetics Initiative of Broad Institute of Harvard and MIT, Lund University, and Novartis Institutes of BioMedical Research , Saxena R, Voight BF, Lyssenko V, Burtt NP, de Bakker PI, Chen H, Roix JJ, Kathiresan S, Hirschhorn JN, Daly MJ, Hughes TE, Groop L, Altshuler D, Almgren P, Florez JC, Meyer J, Ardlie K, Bengtsson Boström K, Isomaa B, Lettre G, Lindblad U, Lyon HN, Melander O, Newton-Cheh C, Nilsson P, Orho-Melander M, Råstam L, Speliotes EK, Taskinen MR, Tuomi T, Guiducci C, Berglund A, Carlson J, Gianniny L, Hackett R, Hall L, Holmkvist J, Laurila E, Sjögren M, Sterner M, Surti A, Svensson M, Svensson M, Tewhey R, Blumenstiel B, Parkin M, Defelice M, Barry R, Brodeur W, Camarata J, Chia N, Fava M, Gibbons J, Handsaker B, Healy C, Nguyen K, Gates C, Sougnez C, Gage D, Nizzari M, Gabriel SB, Chirn GW, Ma Q, Parikh H, Richardson D, Ricke D, Purcell S, Genome-wide association analysis identifies loci for type 2 diabetes and triglyceride levels Science316:1331-6 2007
PubMed ID: 17463246
Douglas JA, Levin AM, Zuhlke KA, Ray AM, Johnson GR, Lange EM, Wood DP, Cooney KA, Common variation in the BRCA1 gene and prostate cancer risk Cancer epidemiology, biomarkers & prevention16:1510-6 2007
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Easton DF, Pooley KA, Dunning AM, Pharoah PD, Thompson D, Ballinger DG, Struewing JP, Morrison J, Field H, Luben R, Wareham N, Ahmed S, Healey CS, Bowman R, SEARCH collaborators R, Meyer KB, Haiman CA, Kolonel LK, Henderson BE, Le Marchand L, Brennan P, Sangrajrang S, Gaborieau V, Odefrey F, Shen CY, Wu PE, Wang HC, Eccles D, Evans DG, Peto J, Fletcher O, Johnson N, Seal S, Stratton MR, Rahman N, Chenevix-Trench G, Bojesen SE, Nordestgaard BG, Axelsson CK, Garcia-Closas M, Brinton L, Chanock S, Lissowska J, Peplonska B, Nevanlinna H, Fagerholm R, Eerola H, Kang D, Yoo KY, Noh DY, Ahn SH, Hunter DJ, Hankinson SE, Cox DG, Hall P, Wedren S, Liu J, Low YL, Bogdanova N, Schürmann P, Dörk T, Tollenaar RA, Jacobi CE, Devilee P, Klijn JG, Sigurdson AJ, Doody MM, Alexander BH, Zhang J, Cox A, Brock IW, MacPherson G, Reed MW, Couch FJ, Goode EL, Olson JE, Meijers-Heijboer H, van den Ouweland A, Uitterlinden A, Rivadeneira F, Milne RL, Ribas G, Gonzalez-Neira A, Benitez J, Hopper JL, McCredie M, Southey M, Giles GG, Schroen C, Justenhoven C, Brauch H, Hamann U, Ko YD, Spurdle AB, Beesley J, Chen X, kConFab X, AOCS Management Group X, Mannermaa A, Kosma VM, Kataja V, Hartikainen J, Day NE, Cox DR, Ponder BA, Genome-wide association study identifies novel breast cancer susceptibility loci Nature447:1087-93 2007
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Feigelson HS, Rodriguez C, Welch R, Hutchinson A, Shao W, Jacobs K, Diver WR, Calle EE, Thun MJ, Hunter DJ, Thomas G, Chanock SJ, Successful genome-wide scan in paired blood and buccal samples Cancer epidemiology, biomarkers & prevention16:1023-5 2007
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Freudenberg J, Fu YH, Ptá Cbreve Ek LJ, Enrichment of HapMap recombination hotspot predictions around human nervous system genes: evidence for positive selection ? Eur J Hum Genet15(10):1071-8 2007
PubMed ID: 17568387
Freudenberg J, Fu YH, Ptácek LJ, Human recombination rates are increased around accelerated conserved regions--evidence for continued selection? Bioinformatics (Oxford, England)23:1441-3 2007
PubMed ID: 17463031
Hunter DJ, Kraft P, Jacobs KB, Cox DG, Yeager M, Hankinson SE, Wacholder S, Wang Z, Welch R, Hutchinson A, Wang J, Yu K, Chatterjee N, Orr N, Willett WC, Colditz GA, Ziegler RG, Berg CD, Buys SS, McCarty CA, Feigelson HS, Calle EE, Thun MJ, Hayes RB, Tucker M, Gerhard DS, Fraumeni JF, Hoover RN, Thomas G, Chanock SJ, A genome-wide association study identifies alleles in FGFR2 associated with risk of sporadic postmenopausal breast cancer Nature genetics39:870-4 2007
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Johansson A, Vavruch-Nilsson V, Cox DR, Frazer KA, Gyllensten U, Evaluation of the SNP tagging approach in an independent population sample-array-based SNP discovery in Sami Human genetics122:141-50 2007
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King TM, Au KS, Kirkpatrick TJ, Davidson C, Fletcher JM, Townsend I, Tyerman GH, Shimmin LC, Northrup H, The Impact of BRCA1 on Spina Bifida Meningomyelocele Lesions Ann Hum Genet71(Pt6):719-28 2007
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Klitø NG, Tan Q, Nyegaard M, Brusgaard K, Thomassen M, Skouboe C, Dahlgaard J, Kruse TA, Arrayed primer extension in the "array of arrays" format: a rational approach for microarray-based SNP genotyping Genetic testing11:160-6 2007
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Kullo IJ, Ding K, Patterns of population differentiation of candidate genes for cardiovascular disease BMC genetics8:48 2007
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Leak TS, Keene KL, Langefeld CD, Gallagher CJ, Mychaleckyj JC, Freedman BI, Bowden DW, Rich SS, Sale MM, Association of the proprotein convertase subtilisin/kexin-type 2 (PCSK2) gene with type 2 diabetes in an African American population Mol Genet Metab92(1-2):145-50 2007
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Lie BA, Viken MK, Akselsen HE, Flåm ST, Pociot F, Nerup J, Kockum I, Cambon-Thomsen A, Thorsby E, Undlien DE, Association analysis in type 1 diabetes of the PRSS16 gene encoding a thymus-specific serine protease Human immunology68:592-8 2007
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Mägi R, Pfeufer A, Nelis M, Montpetit A, Metspalu A, Remm M, Evaluating the performance of commercial whole-genome marker sets for capturing common genetic variation BMC genomics8:159 2007
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Marchini J, Howie B, Myers S, McVean G, Donnelly P, A new multipoint method for genome-wide association studies by imputation of genotypes Nature genetics39:906-13 2007
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Matarín M, Brown WM, Scholz S, Simón-Sánchez J, Fung HC, Hernandez D, Gibbs JR, De Vrieze FW, Crews C, Britton A, Langefeld CD, Brott TG, Brown RD, Worrall BB, Frankel M, Silliman S, Case LD, Singleton A, Hardy JA, Rich SS, Meschia JF, A genome-wide genotyping study in patients with ischaemic stroke: initial analysis and data release Lancet neurology6:414-20 2007
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McPherson R, Pertsemlidis A, Kavaslar N, Stewart A, Roberts R, Cox DR, Hinds DA, Pennacchio LA, Tybjaerg-Hansen A, Folsom AR, Boerwinkle E, Hobbs HH, Cohen JC, A common allele on chromosome 9 associated with coronary heart disease Science316:1488-91 2007
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Moffatt MF, Kabesch M, Liang L, Dixon AL, Strachan D, Heath S, Depner M, von Berg A, Bufe A, Rietschel E, Heinzmann A, Simma B, Frischer T, Willis-Owen SA, Wong KC, Illig T, Vogelberg C, Weiland SK, von Mutius E, Abecasis GR, Farrall M, Gut IG, Lathrop GM, Cookson WO, Genetic variants regulating ORMDL3 expression contribute to the risk of childhood asthma Nature448:470-3 2007
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Ohnishi T, Yamada K, Ohba H, Iwayama Y, Toyota T, Hattori E, Inada T, Kunugi H, Tatsumi M, Ozaki N, Iwata N, Sakamoto K, Iijima Y, Iwata Y, Tsuchiya KJ, Sugihara G, Nanko S, Osumi N, Detera-Wadleigh SD, Kato T, Yoshikawa T, A promoter haplotype of the inositol monophosphatase 2 gene (IMPA2) at 18p112 confers a possible risk for bipolar disorder by enhancing transcription Neuropsychopharmacology32:1727-37 2007
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Pal P, Xi H, Sun G, Kaushal R, Meeks J, Thaxton Shad, Guha S, Jin H, Suarez K, Catalona J, Deka R, Tagging SNPs in the kallikrein genes 3 and 2 on 19q13 and their associations with prostate cancer in men of European origin Human Genetics122(3-4):251-9 2007
PubMed ID: 17593395
Pickrell J, Clerget-Darpoux F, Bourgain C, Power of genome-wide association studies in the presence of interacting loci Genet Epidemiol31(7):48-62 2007
PubMed ID: 17508359
Post W, Shen H, Damcott C, Arking DE, Kao WH, Sack PA, Ryan KA, Chakravarti A, Mitchell BD, Shuldiner AR, Associations between genetic variants in the NOS1AP (CAPON) gene and cardiac repolarization in the old order Amish Human heredity64:214-9 2007
PubMed ID: 17565224
Rezende VB, Barbosa F, Montenegro MF, Sandrim VC, Gerlach RF, Tanus-Santos JE, An interethnic comparison of the distribution of vitamin D receptor genotypes and haplotypes Clinica chimica acta384:155-9 2007
PubMed ID: 17582391
Stranger BE, Nica AC, Forrest MS, Dimas A, Bird CP, Beazley C, Ingle CE, Dunning M, Flicek P, Koller D, Montgomery S, Tavaré S, Deloukas P, Dermitzakis ET, Population genomics of human gene expression Nature genetics39:1217-24 2007
PubMed ID: 17873874
Stefansson H, Rye DB, Hicks A, Petursson H, Ingason A, Thorgeirsson TE, Palsson S, Sigmundsson T, Sigurdsson AP, Eiriksdottir I, Soebech E, Bliwise D, Beck JM, Rosen A, Waddy S, Trotti LM, Iranzo A, Thambisetty M, Hardarson GA, Kristjansson K, Gudmundsson LJ, Thorsteinsdottir U, Kong A, Gulcher JR, Gudbjartsson D, Stefansson K, A genetic risk factor for periodic limb movements in sleep The New England journal of medicine357:639-47 2007
PubMed ID: 17634447
Stokowski RP, Pant PV, Dadd T, Fereday A, Hinds DA, Jarman C, Filsell W, Ginger RS, Green MR, van der Ouderaa FJ, Cox DR, A genomewide association study of skin pigmentation in a South Asian population American journal of human genetics81:1119-32 2007
PubMed ID: 17999355
Salonen JT, Uimari P, Aalto JM, Pirskanen M, Kaikkonen J, Todorova B, Hyppönen J, Korhonen VP, Asikainen J, Devine C, Tuomainen TP, Luedemann J, Nauck M, Kerner W, Stephens RH, New JP, Ollier WE, Gibson JM, Payton A, Horan MA, Pendleton N, Mahoney W, Meyre D, Delplanque J, Froguel P, Luzzatto O, Yakir B, Darvasi A, Type 2 diabetes whole-genome association study in four populations: the DiaGen consortium American journal of human genetics81:338-45 2007
PubMed ID: 17668382
Samani NJ, Erdmann J, Hall AS, Hengstenberg C, Mangino M, Mayer B, Dixon RJ, Meitinger T, Braund P, Wichmann HE, Barrett JH, König IR, Stevens SE, Szymczak S, Tregouet DA, Iles MM, Pahlke F, Pollard H, Lieb W, Cambien F, Fischer M, Ouwehand W, Blankenberg S, Balmforth AJ, Baessler A, Ball SG, Strom TM, Braenne I, Gieger C, Deloukas P, Tobin MD, Ziegler A, Thompson JR, Schunkert H, WTCCC and the Cardiogenics Consortium H, Genomewide association analysis of coronary artery disease The New England journal of medicine357:443-53 2007
PubMed ID: 17634449
Shen GQ, Li L, Girelli D, Seidelmann SB, Rao S, Fan C, Park JE, Xi Q, Li J, Hu Y, Olivieri O, Marchant K, Barnard J, Corrocher R, Elston R, Cassano J, Henderson S, Hazen SL, Plow EF, Topol EJ, Wang QK, An LRP8 variant is associated with familial and premature coronary artery disease and myocardial infarction American journal of human genetics81:780-91 2007
PubMed ID: 17847002
Paschou P, Ziv E, Burchard EG, Choudhry S, Rodriguez-Cintron W, Mahoney MW, Drineas P, PCA-correlated SNPs for structure identification in worldwide human populations PLoS genetics3:1672-86 2007
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Plenge RM, Seielstad M, Padyukov L, Lee AT, Remmers EF, Ding B, Liew A, Khalili H, Chandrasekaran A, Davies LR, Li W, Tan AK, Bonnard C, Ong RT, Thalamuthu A, Pettersson S, Liu C, Tian C, Chen WV, Carulli JP, Beckman EM, Altshuler D, Alfredsson L, Criswell LA, Amos CI, Seldin MF, Kastner DL, Klareskog L, Gregersen PK, TRAF1-C5 as a risk locus for rheumatoid arthritis--a genomewide study The New England journal of medicine357:1199-209 2007
PubMed ID: 17804836
Shi J, Hattori E, Zou H, Badner JA, Christian SL, Gershon ES, Liu C, No evidence for association between 19 cholinergic genes and bipolar disorder American journal of medical genetics Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics144:715-23 2007
PubMed ID: 17373692
Plenge RM, Cotsapas C, Davies L, Price AL, de Bakker PI, Maller J, Pe'er I, Burtt NP, Blumenstiel B, DeFelice M, Parkin M, Barry R, Winslow W, Healy C, Graham RR, Neale BM, Izmailova E, Roubenoff R, Parker AN, Glass R, Karlson EW, Maher N, Hafler DA, Lee DM, Seldin MF, Remmers EF, Lee AT, Padyukov L, Alfredsson L, Coblyn J, Weinblatt ME, Gabriel SB, Purcell S, Klareskog L, Gregersen PK, Shadick NA, Daly MJ, Altshuler D, Two independent alleles at 6q23 associated with risk of rheumatoid arthritis Nature genetics39:1477-82 2007
PubMed ID: 17982456
Raelson JV, Little RD, Ruether A, Fournier H, Paquin B, Van Eerdewegh P, Bradley WE, Croteau P, Nguyen-Huu Q, Segal J, Debrus S, Allard R, Rosenstiel P, Franke A, Jacobs G, Nikolaus S, Vidal JM, Szego P, Laplante N, Clark HF, Paulussen RJ, Hooper JW, Keith TP, Belouchi A, Schreiber S, Genome-wide association study for Crohn's disease in the Quebec Founder Population identifies multiple validated disease loci Proceedings of the National Academy of Sciences of the United States of America104:14747-52 2007
PubMed ID: 17804789
Ramírez J, Liu W, Mirkov S, Desai AA, Chen P, Das S, Innocenti F, Ratain MJ, Lack of association between common polymorphisms in UGT1A9 and gene expression and activity Drug metabolism and disposition: the biological fate of chemicals35:2149-53 2007
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Nannya Y, Taura K, Kurokawa M, Chiba S, Ogawa S, Evaluation of genome-wide power of genetic association studies based on empirical data from the HapMap project Human molecular genetics16:3494-505 2007
PubMed ID: 17666406
Newton-Cheh C, Guo CY, Wang TJ, O'donnell CJ, Levy D, Larson MG, Genome-wide association study of electrocardiographic and heart rate variability traits: the Framingham Heart Study BMC medical genetics8 Suppl 1:S7 2007
PubMed ID: 17903306
No authors listed, Second Phase of HapMap project completed Pharmacogenomics8(11):1489-91 2007
PubMed ID: 18034613
Nunkesser R, Bernholt T, Schwender H, Ickstadt K, Wegener I, Detecting high-order interactions of single nucleotide polymorphisms using genetic programming Bioinformatics (Oxford, England)23:3280-8 2007
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McCauley JL, Kenealy SJ, Margulies EH, Schnetz-Boutaud N, Gregory SG, Hauser SL, Oksenberg JR, Pericak-Vance MA, Haines JL, Mortlock DP, SNPs in Multi-species Conserved Sequences (MCS) as useful markers in association studies: a practical approach BMC genomics8:266 2007
PubMed ID: 17683615
Lesueur F, Oudot T, Heath S, Foglio M, Lathrop M, Prud'homme JF, Fischer J, ADAM33, a new candidate for psoriasis susceptibility PLoS ONE2:e906 2007
PubMed ID: 17878941
Kohler JR, Cutler DJ, Simultaneous discovery and testing of deletions for disease association in SNP genotyping studies American journal of human genetics81:684-99 2007
PubMed ID: 17846995
Kwan T, Benovoy D, Dias C, Gurd S, Serre D, Zuzan H, Clark TA, Schweitzer A, Staples MK, Wang H, Blume JE, Hudson TJ, Sladek R, Majewski J, Heritability of alternative splicing in the human genome Genome research17:1210-8 2007
PubMed ID: 17671095
Lamba JK, Crews K, Pounds S, Schuetz EG, Gresham J, Gandhi V, Plunkett W, Rubnitz J, Ribeiro R, Pharmacogenetics of deoxycytidine kinase: identification and characterization of novel genetic variants The Journal of pharmacology and experimental therapeutics323:935-45 2007
PubMed ID: 17855478
Lamy P, Andersen L, Dyrskjot L, Torring N, Wiuf C, A Hidden Markov Model to estimate population mixture and allelic copy-numbers in cancers using Affymetrix SNP arrays BMC Bioinformatics8(1):434 2007
PubMed ID: 17996079
Lee H, Sininger L, Jen JC, Cha YH, Baloh RW, Nelson SF, Association of progesterone receptor with migraine-associated vertigo Neurogenetics8:195-200 2007
PubMed ID: 17609999
Huang QY, Kung AW, The association of common polymorphisms in the QPCT gene with bone mineral density in the Chinese population Journal of human genetics52:757-62 2007
PubMed ID: 17687619
Huang RS, Duan S, Shukla SJ, Kistner EO, Clark TA, Chen TX, Schweitzer AC, Blume JE, Dolan ME, Identification of genetic variants contributing to cisplatin-induced cytotoxicity by use of a genomewide approach American journal of human genetics81:427-37 2007
PubMed ID: 17701890
Huggins P, Pachter L, Sturmfels B, Toward the human genotope Bulletin of mathematical biology69:2723-35 2007
PubMed ID: 17874271
Keinan A, Mullikin JC, Patterson N, Reich D, Measurement of the human allele frequency spectrum demonstrates greater genetic drift in East Asians than in Europeans Nature genetics39:1251-5 2007
PubMed ID: 17828266
Hanchard N, Elzein A, Trafford C, Rockett K, Pinder M, Jallow M, Harding R, Kwiatkowski D, McKenzie C, Classical sickle beta-globin haplotypes exhibit a high degree of long-range haplotype similarity in African and Afro-Caribbean populations BMC genetics8:52 2007
PubMed ID: 17688704
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The International HapMap Consortium , (Participants are arranged by institution and then alphabetically within institutions except for Principal Investigators and Project Leaders, as indicated.) , Genotyping centres: Perlegen Sciences , Frazer KA, Ballinger DG, Cox DR, Hinds DA, Stuve LL, Baylor College of Medicine and ParAllele BioScience LL, Gibbs RA, Belmont JW, Boudreau A, Hardenbol P, Leal SM, Pasternak S, Wheeler DA, Willis TD, Yu F, Beijing Genomics Institute F, Yang H, Zeng C, Gao Y, Hu H, Hu W, Li C, Lin W, Liu S, Pan H, Tang X, Wang J, Wang W, Yu J, Zhang B, Zhang Q, Zhao H, Zhao H, Zhou J, Broad Institute of Harvard and Massachusetts Institute of Technology J, Gabriel SB, Barry R, Blumenstiel B, Camargo A, Defelice M, Faggart M, Goyette M, Gupta S, Moore J, Nguyen H, Onofrio RC, Parkin M, Roy J, Stahl E, Winchester E, Ziaugra L, Altshuler D, Chinese National Human Genome Center at Beijing D, Shen Y, Yao Z, Chinese National Human Genome Center at Shanghai Z, Huang W, Chu X, He Y, Jin L, Liu Y, Shen Y, Sun W, Wang H, Wang Y, Wang Y, Xiong X, Xu L, Chinese University of Hong Kong L, Waye MM, Tsui SK, Hong Kong University of Science and Technology SK, Xue H, Wong JT, Illumina JT, Galver LM, Fan JB, Gunderson K, Murray SS, Oliphant AR, Chee MS, McGill University and Génome Québec Innovation Centre MS, Montpetit A, Chagnon F, Ferretti V, Leboeuf M, Olivier JF, Phillips MS, Roumy S, Sallée C, Verner A, Hudson TJ, University of California at San Francisco and Washington University TJ, Kwok PY, Cai D, Koboldt DC, Miller RD, Pawlikowska L, Taillon-Miller P, Xiao M, University of Hong Kong M, Tsui LC, Mak W, Qiang Song Y, Tam PK, University of Tokyo and RIKEN PK, Nakamura Y, Kawaguchi T, Kitamoto T, Morizono T, Nagashima A, Ohnishi Y, Sekine A, Tanaka T, Tsunoda T, Wellcome Trust Sanger Institute T, Deloukas P, Bird CP, Delgado M, Dermitzakis ET, Gwilliam R, Hunt S, Morrison J, Powell D, Stranger BE, Whittaker P, Bentley DR, Analysis groups: Broad Institute DR, Daly MJ, de Bakker PI, Barrett J, Chretien YR, Maller J, McCarroll S, Patterson N, Pe'er I, Price A, Purcell S, Richter DJ, Sabeti P, Saxena R, Schaffner SF, Sham PC, Varilly P, Altshuler D, Cold Spring Harbor Laboratory D, Stein LD, Krishnan L, Vernon Smith A, Tello-Ruiz MK, Thorisson GA, Johns Hopkins University School of Medicine GA, Chakravarti A, Chen PE, Cutler DJ, Kashuk CS, Lin S, University of Michigan S, Abecasis GR, Guan W, Li Y, Munro HM, Steve Qin Z, Thomas DJ, University of Oxford DJ, McVean G, Auton A, Bottolo L, Cardin N, Eyheramendy S, Freeman C, Marchini J, Myers S, Spencer C, Stephens M, Donnelly P, University of Oxford,Wellcome Trust Centre for Human Genetics P, Cardon LR, Clarke G, Evans DM, Morris AP, Weir BS, RIKEN BS, Tsunoda T, US National Institutes of Health T, Mullikin JC, US National Institutes of Health National Center for Biotechnology Information JC, Sherry ST, Feolo M, Skol A, Community engagement/public consultation and sample collection groups: Beijing Normal University and Beijing Genomics Institute A, Zhang H, Zeng C, Zhao H, Health Sciences University of Hokkaido, Eubios Ethics Institute, and Shinshu University H, Matsuda I, Fukushima Y, Macer DR, Suda E, Howard University and University of Ibadan E, Rotimi CN, Adebamowo CA, Ajayi I, Aniagwu T, Marshall PA, Nkwodimmah C, Royal CD, University of Utah CD, Leppert MF, Dixon M, Peiffer A, Ethical, legal and social issues: Chinese Academy of Social Sciences A, Qiu R, Genetic Interest Group R, Kent A, Kyoto University A, Kato K, Nagasaki University K, Niikawa N, University of Ibadan School of Medicine N, Adewole IF, University of Montréal IF, Knoppers BM, University of Oklahoma BM, Foster MW, Vanderbilt University MW, Wright Clayton E, Wellcome Trust E, Watkin J, SNP discovery: Baylor College of Medicine J, Gibbs RA, Belmont JW, Muzny D, Nazareth L, Sodergren E, Weinstock GM, Wheeler DA, Yakub I, Broad Institute of Harvard and Massachusetts Institute of Technology I, Gabriel SB, Onofrio RC, Richter DJ, Ziaugra L, Birren BW, Daly MJ, Altshuler D, Washington University D, Wilson RK, Fulton LL, Wellcome Trust Sanger Institute LL, Rogers J, Burton J, Carter NP, Clee CM, Griffiths M, Jones MC, McLay K, Plumb RW, Ross MT, Sims SK, Willey DL, Scientific management: Chinese Academy of Sciences DL, Chen Z, Han H, Kang L, Genome Canada L, Godbout M, Wallenburg JC, Génome Québec JC, L'archevêque P, Bellemare G, Japanese Ministry of Education, Culture, Sports, Science and Technology G, Saeki K, Ministry of Science and Technology of the People’s Republic of China K, Wang H, An D, Fu H, Li Q, Wang Z, The Human Genetic Resource Administration of China Z, Wang R, The SNP Consortium R, Holden AL, US National Institutes of Health AL, Brooks LD, McEwen JE, Guyer MS, Ota Wang V, Peterson JL, Shi M, Spiegel J, Sung LM, Zacharia LF, Collins FS, Wellcome Trust FS, Kennedy K, Jamieson R, Stewart J, A second generation human haplotype map of over 31 million SNPs Nature449:851-861 2007
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Zhernakova A, Alizadeh BZ, Bevova M, van Leeuwen MA, Coenen MJ, Franke B, Franke L, Posthumus MD, van Heel DA, van der Steege G, Radstake TR, Barrera P, Roep BO, Koeleman BP, Wijmenga C, Novel association in chromosome 4q27 region with rheumatoid arthritis and confirmation of type 1 diabetes point to a general risk locus for autoimmune diseases American journal of human genetics81:1284-8 2007
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Zhu X, Cooper RS, Admixture Mapping Provides Evidence of Association of the VNN1 Gene with Hypertension PLoS ONE2:e1244 2007
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Xu Y, Xue Y, Asan Y, Daly A, Wu L, Tyler-Smith C, Variation of the oxytocin/neurophysin I (OXT) gene in four human populations Journal of human genetics53:637-43 2007
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Hosono N, Kubo M, Tsuchiya Y, Sato H, Kitamoto T, Saito S, Ohnishi Y, Nakamura Y, Multiplex PCR-based real-time invader assay (mPCR-RETINA): a novel SNP-based method for detecting allelic asymmetries within copy number variation regions Human mutation29:182-9 2007
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Tenesa A, Navarro P, Hayes BJ, Duffy DL, Clarke GM, Goddard ME, Visscher PM, Recent human effective population size estimated from linkage disequilibrium Genome research17:520-6 2007
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Vaclavicek A, Bermejo Lorenzo, Wappenschmidt B, Meindl A, Sutter C, Schmutzler K, Kiechle M, Bugert P, Burwinkel B, Bartram R, Hemminki K, Försti A, Genetic variation in the major mitotic checkpoint genes does not affect familial breast cancer risk Breast Cancer Res Treat106(2):205-13 2007
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Vormfelde SV, Sehrt D, Toliat MR, Schirmer M, Meineke I, Tzvetkov M, Nürnberg P, Brockmöller J, Genetic Variation in the Renal Sodium Transporters NKCC2, NCC, and ENaC in Relation to the Effects of Loop Diuretic Drugs Clin Pharmacol Ther82(3):300-309 2007
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Walsh S, Metter EJ, Ferrucci L, Roth SM, Activin RIIB and Follistatin Haplotype Associations with Muscle Mass and Strength in Humans J Appl Physiol102(6):2142-8 2007
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Wang Z, Wang J, Tantoso E, Wang B, Tai AY, Ooi LL, Chong SS, Lee CG, Signatures of recent positive selection at the ATP-binding cassette drug transporter superfamily gene loci Human molecular genetics16:1367-80 2007
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Witherspoon DJ, Wooding S, Rogers AR, Marchani EE, Watkins WS, Batzer MA, Jorde LB, Genetic Similarities Within and Between Human Populations Genetics176(1):351-9 2007
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Huang RS, Duan S, Bleibel WK, Kistner EO, Zhang W, Clark TA, Chen TX, Schweitzer AC, Blume JE, Cox NJ, Dolan ME, A genome-wide approach to identify genetic variants that contribute to etoposide-induced cytotoxicity Proceedings of the National Academy of Sciences of the United States of America104:9758-63 2007
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Lo WS, Xu Z, Yu Z, Pun FW, Ng SK, Chen J, Tong KL, Zhao C, Xu X, Tsang SY, Harano M, Stöber G, Nimgaonkar VL, Xue H, Positive selection within the Schizophrenia-associated GABA(A) receptor beta(2) gene PloS one2:e462 2007
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Plenge R, Rioux JD, Identifying susceptibility genes for immunological disorders: patterns, power, and proof Immunological reviews210:40-51 2006
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Spinola M, Meyer P, Kammerer S, Falvella FS, Boettger MB, Hoyal CR, Pignatiello C, Fischer R, Roth RB, Pastorino U, Haeussinger K, Nelson MR, Dierkesmann R, Dragani TA, Braun A, Association of the PDCD5 locus with lung cancer risk and prognosis in smokers Journal of clinical oncology : official journal of the American Society of Clinical Oncology24:1672-8 2006
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Sun MW, Lee JY, de Bakker PI, Burtt NP, Almgren P, Råstam L, Tuomi T, Gaudet D, Daly MJ, Hirschhorn JN, Altshuler D, Groop L, Florez JC, Haplotype structures and large-scale association testing of the 5' AMP-activated protein kinase genes PRKAA2, PRKAB1, and PRKAB2 [corrected] with type 2 diabetes Diabetes55:849-55 2006
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Weigmann K, Racial medicine: here to stay? The success of the International HapMap Project and other initiatives may help to overcome racial profiling in medicine, but old habits die hard EMBO reports7:246-9 2006
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Williams NM, Green EK, Macgregor S, Dwyer S, Norton N, Williams H, Raybould R, Grozeva D, Hamshere M, Zammit S, Jones L, Cardno A, Kirov G, Jones I, O'Donovan MC, Owen MJ, Craddock N, Variation at the DAOA/G30 locus influences susceptibility to major mood episodes but not psychosis in schizophrenia and bipolar disorder Archives of general psychiatry63:366-73 2006
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Newman TL, Rieder MJ, Morrison VA, Sharp AJ, Smith JD, Sprague LJ, Kaul R, Carlson CS, Olson MV, Nickerson DA, Eichler EE, High-throughput genotyping of intermediate-size structural variation Human molecular genetics15:1159-67 2006
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Pastinen T, Ge B, Hudson TJ, Influence of human genome polymorphism on gene expression Human molecular genetics15 Spec No 1:R9-16 2006
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Yeager M, Orr N, Hayes RB, Jacobs KB, Kraft P, Wacholder S, Minichiello MJ, Fearnhead P, Yu K, Chatterjee N, Wang Z, Welch R, Staats BJ, Calle EE, Feigelson HS, Thun MJ, Rodriguez C, Albanes D, Virtamo J, Weinstein S, Schumacher FR, Giovannucci E, Willett WC, Cancel-Tassin G, Cussenot O, Valeri A, Andriole GL, Gelmann EP, Tucker M, Gerhard DS, Fraumeni JF, Hoover R, Hunter DJ, Chanock SJ, Thomas G, Genome-wide association study of prostate cancer identifies a second risk locus at 8q24 Nature Genetics39:645-649 2006
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Yu CE, Seltman H, Peskind ER, Galloway N, Zhou PX, Rosenthal E, Wijsman EM, Tsuang DW, Devlin B, Schellenberg GD, Comprehensive analysis of APOE and selected proximate markers for late-onset Alzheimer's disease: Patterns of linkage disequilibrium and disease/marker association Genomics89:655-665 2006
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Zaitlen N, Kang HM, Eskin E, Halperin E, Leveraging the HapMap correlation structure in association studies American journal of human genetics80:683-91 2006
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McCarroll SA, Hadnott TN, Perry GH, Sabeti PC, Zody MC, Barrett JC, Dallaire S, Gabriel SB, Lee C, Daly MJ, Altshuler DM; International HapMap Consortium., Common deletion polymorphisms in the human genome. Nat Genet38(1):86-92 2006
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Florez JC, Wiltshire S, Agapakis CM, Burtt NP, de Bakker PI, Almgren P, Bengtsson Bostrom K, Tuomi T, Gaudet D, Daly MJ, Hirschhorn JN, McCarthy MI, Altshuler D, Groop L, High-density haplotype structure and association testing of the insulin-degrading enzyme (IDE) gene with type 2 diabetes in 4,206 people. Diabetes55(1):128-35 2006
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Stankovich J, Cox CJ, Tan RB, Montgomery DS, Huxtable SJ, Rubio JP, Ehm MG, Johnson L, Butzkueven H, Kilpatrick TJ, Speed TP, Roses AD, Bahlo M, Foote SJ, On the utility of data from the International HapMap Project for Australian association studies. Hum Genet119(1-2):220-2 2006
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Steemers FJ, Chang W, Lee G, Barker DL, Shen R, Gunderson KL, Whole-genome genotyping with the single-base extension assay. Nat Methods3(1):31-3 2006
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Conrad DF, Andrews TD, Carter NP, Hurles ME, Pritchard JK, A high-resolution survey of deletion polymorphism in the human genome. Nat Genet38(1):75-81 2006
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Garcia-Barcelo M, So MT, Lau DK, Leon TY, Yuan ZW, Cai WS, Lui VC, Fu M, Herbrick JA, Gutter E, Proud V, Li L, Pierre-Louis J, Aleck K, van Heurn E, Belloni E, Scherer SW, Tam PK, Population differences in the polyalanine domain and 6 new mutations in HLXB9 in patients with Currarino syndrome. Clin Chem52(1):46-52 2006
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Helgadottir A, Manolescu A, Helgason A, Thorleifsson G, Thorsteinsdottir U, Gudbjartsson DF, Gretarsdottir S, Magnusson KP, Gudmundsson G, Hicks A, Jonsson T, Grant SF, Sainz J, O'Brien SJ, Sveinbjornsdottir S, Valdimarsson EM, Matthiasson SE, Levey AI, Abramson JL, Reilly MP, Vaccarino V, Wolfe ML, Gudnason V, Quyyumi AA, Topol EJ, Rader DJ, Thorgeirsson G, Gulcher JR, Hakonarson H, Kong A, Stefansson K, A variant of the gene encoding leukotriene A4 hydrolase confers ethnicity-specific risk of myocardial infarction. Nat Genet38(1):68-74 2006
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Ireland J, Carlton VE, Falkowski M, Moorhead M, Tran K, Useche F, Hardenbol P, Erbilgin A, Fitzgerald R, Willis TD, Faham M, Large-scale characterization of public database SNPs causing non-synonymous changes in three ethnic groups. Hum Genet119(1-2):75-83 2006
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Marchini J, Cutler D, Patterson N, Stephens M, Eskin E, Halperin E, Lin S, Qin ZS, Munro HM, Abecasis GR, Donnelly P; International HapMap Consortium, A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet78(3):437-50 2006
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Silberberg G, Darvasi A, Pinkas-Kramarski R, Navon R, The involvement of ErbB4 with schizophrenia: association and expression studies. Am J Med Genet B Neuropsychiatr Genet141(2):142-8 2006
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Taylor JA, Xu ZL, Kaplan NL, Morris RW, How well do HapMap haplotypes identify common haplotypes of genes? A comparison with haplotypes of 334 genes resequenced in the environmental genome project. Cancer Epidemiol Biomarkers Prev15(1):133-7 2006
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Zhu H, Yang W, Lu W, Zhang J, Shaw GM, Lammer EJ, Finnell RH, A known functional polymorphism (Ile120Val) of the human PCMT1 gene and risk of spina bifida. Mol Genet Metab87(1):66-70 2006
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Herbert A, Gerry NP, McQueen MB, Heid IM, Pfeufer A, Illig T, Wichmann HE, Meitinger T, Hunter D, Hu FB, Colditz G, Hinney A, Hebebrand J, Koberwitz K, Zhu X, Cooper R, Ardlie K, Lyon H, Hirschhorn JN, Laird NM, Lenburg ME, Lange C, Christman MF, A common genetic variant is associated with adult and childhood obesity Science312:279-83 2006
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Kathiresan S, Larson MG, Vasan RS, Guo CY, Gona P, Keaney JF, Wilson PW, Newton-Cheh C, Musone SL, Camargo AL, Drake JA, Levy D, O'Donnell CJ, Hirschhorn JN, Benjamin EJ, Contribution of clinical correlates and 13 C-reactive protein gene polymorphisms to interindividual variability in serum C-reactive protein level Circulation113:1415-23 2006
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Siitonen N, Pulkkinen L, Mager U, Lindström J, Eriksson JG, Valle TT, Hämäläinen H, Ilanne-Parikka P, Keinänen-Kiukaanniemi S, Tuomilehto J, Laakso M, Uusitupa M, Association of sequence variations in the gene encoding adiponectin receptor 1 (ADIPOR1) with body size and insulin levels The Finnish Diabetes Prevention Study Diabetologia49:1795-805 2006
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Gunderson KL, Kuhn KM, Steemers FJ, Ng P, Murray SS, Shen R, Whole-genome genotyping of haplotype tag single nucleotide polymorphisms Pharmacogenomics7:641-8 2006
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García-Martín E, Martínez C, Ladero JM, Agúndez JA, Interethnic and intraethnic variability of CYP2C8 and CYP2C9 polymorphisms in healthy individuals Molecular diagnosis & therapy10:29-40 2006
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Sabeti PC, Schaffner SF, Fry B, Lohmueller J, Varilly P, Shamovsky O, Palma A, Mikkelsen TS, Altshuler D, Lander ES, Positive natural selection in the human lineage Science312:1614-20 2006
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Pe'er I, de Bakker PI, Maller J, Yelensky R, Altshuler D, Daly MJ, Evaluating and improving power in whole-genome association studies using fixed marker sets Nature genetics38:663-7 2006
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Macgregor S, Visscher PM, Montgomery G, Analysis of pooled DNA samples on high density arrays without prior knowledge of differential hybridization rates Nucleic acids research34:e55 2006
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Nakatani N, Hattori E, Ohnishi T, Dean B, Iwayama Y, Matsumoto I, Kato T, Osumi N, Higuchi T, Niwa S, Yoshikawa T, Genome-wide expression analysis detects eight genes with robust alterations specific to bipolar I disorder: relevance to neuronal network perturbation Human molecular genetics15:1949-62 2006
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Min JL, Meulenbelt I, Riyazi N, Kloppenburg M, Houwing-Duistermaat JJ, Seymour AB, van Duijn CM, Slagboom PE, Association of matrilin-3 polymorphisms with spinal disc degeneration and osteoarthritis of the first carpometacarpal joint of the hand Annals of the rheumatic diseases65:1060-6 2006
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Carlson CS, Agnosticism and equity in genome-wide association studies Nature genetics38:605-6 2006
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Barrett JC, Cardon LR, Evaluating coverage of genome-wide association studies Nature genetics38:659-62 2006
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Arking DE, Pfeufer A, Post W, Kao WH, Newton-Cheh C, Ikeda M, West K, Kashuk C, Akyol M, Perz S, Jalilzadeh S, Illig T, Gieger C, Guo CY, Larson MG, Wichmann HE, Marbán E, O'Donnell CJ, Hirschhorn JN, Kääb S, Spooner PM, Meitinger T, Chakravarti A, A common genetic variant in the NOS1 regulator NOS1AP modulates cardiac repolarization Nature genetics38:644-51 2006
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Howie BN, Carlson CS, Rieder MJ, Nickerson DA, Efficient selection of tagging single-nucleotide polymorphisms in multiple populations Human genetics120:58-68 2006
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Yu Y, Panhuysen C, Kranzler HR, Hesselbrock V, Rounsaville B, Weiss R, Brady K, Farrer LA, Gelernter J, Intronic variants in the dopa decarboxylase (DDC) gene are associated with smoking behavior in European-Americans and African-Americans Human molecular genetics15:2192-9 2006
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Locke DP, Sharp AJ, McCarroll SA, McGrath SD, Newman TL, Cheng Z, Schwartz S, Albertson DG, Pinkel D, Altshuler DM, Eichler EE, Linkage disequilibrium and heritability of copy-number polymorphisms within duplicated regions of the human genome American journal of human genetics79:275-90 2006
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O'Shaughnessy KM, HapMap, pharmacogenomics, and the goal of personalized prescribing British journal of clinical pharmacology61:783-6 2006
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Andrulionyte L, Peltola P, Chiasson JL, Laakso M, STOP-NIDDM Study Group M, Single nucleotide polymorphisms of PPARD in combination with the Gly482Ser substitution of PGC-1A and the Pro12Ala substitution of PPARG2 predict the conversion from impaired glucose tolerance to type 2 diabetes: the STOP-NIDDM trial Diabetes55:2148-52 2006
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Kim KS, Kim GS, Hwang JY, Lee HJ, Park MH, Kim KJ, Jung J, Cha HS, Shin HD, Kang JH, Park EK, Kim TH, Hong JM, Koh JM, Oh B, Kimm K, Kim SY, Lee JY, Single nucleotide polymorphisms in bone turnover-related genes in Koreans: Ethnic differences in linkage disequilibrium and haplotype BMC Med Genet8(1):70 2006
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McPartland JM, Norris RW, Kilpatrick CW, Tempo and mode in the endocannaboinoid system Journal of molecular evolution65:267-76 2006
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Rioux JD, Xavier RJ, Taylor KD, Silverberg MS, Goyette P, Huett A, Green T, Kuballa P, Barmada MM, Datta LW, Shugart YY, Griffiths AM, Targan SR, Ippoliti AF, Bernard EJ, Mei L, Nicolae DL, Regueiro M, Schumm LP, Steinhart AH, Rotter JI, Duerr RH, Cho JH, Daly MJ, Brant SR, Genome-wide association study identifies new susceptibility loci for Crohn disease and implicates autophagy in disease pathogenesis Nature genetics39:596-604 2006
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Gao X, Starmer J, Human population structure detection via multilocus genotype clustering BMC genetics8:34 2006
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Bibikova M, Chudin E, Arsanjani A, Zhou L, Garcia EW, Modder J, Kostelec M, Barker D, Downs T, Fan JB, Wang-Rodriguez J, Expression signatures that correlated with Gleason score and relapse in prostate cancer Genomics89:666-72 2006
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Conrad DF, Jakobsson M, Coop G, Wen X, Wall JD, Rosenberg NA, Pritchard JK, A worldwide survey of haplotype variation and linkage disequilibrium in the human genome Nature genetics38:1251-60 2006
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Saccone SF, Rice JP, Saccone NL, Power-based, phase-informed selection of single nucleotide polymorphisms for disease association screens Genetic epidemiology30:459-70 2006
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Tang K, Thornton KR, Stoneking M, A New Approach for Using Genome Scans to Detect Recent Positive Selection in the Human Genome PLoS Biol5:e171 2006
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Hull J, Campino S, Rowlands K, Chan MS, Copley RR, Taylor MS, Rockett K, Elvidge G, Keating B, Knight J, Kwiatkowski D, Identification of common genetic variation that modulates alternative splicing PLoS genetics3:e99 2006
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Dixon AL, Liang L, Moffatt MF, Chen W, Heath S, Wong KC, Taylor J, Burnett E, Gut I, Farrall M, Lathrop GM, Abecasis GR, Cookson WO, A genome-wide association study of global gene expression Nature genetics39:1202-7 2006
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